PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023549827.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 173aa    MW: 19131.8 Da    PI: 8.2011
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023549827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.47.7e-41121111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq ++ +l+++la
  XP_023549827.1  12 SCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLA 106
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                      +k++
  XP_023549827.1 107 IAKAR 111
                     99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MRGCHETRSS SSCAACKLLK RRCTPTCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILTEV  60
PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQTKMVE LQHDLAIAKA RLARYADSDH  120
NYNSFSSSLG VLENCVVNMP YGGLSIAAGQ SSSAITQYGY LCDFTHFPYP FKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.11e-65LBD family protein