PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023549826.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 188aa    MW: 20448 Da    PI: 8.2011
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023549826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.19.7e-41121111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq ++ +l+++la
  XP_023549826.1  12 SCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLA 106
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                      +k++
  XP_023549826.1 107 IAKAR 111
                     99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MRGCHETRSS SSCAACKLLK RRCTPTCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILTEV  60
PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQTKMVE LQHDLAIAKA RLARYADSDH  120
NYNSFSSSSS SSSSSSSSPS SSSLGVLENC VVNMPYGGLS IAAGQSSSAI TQYGYLCDFT  180
HFPYPFKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.13e-64LBD family protein