PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023549821.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family RAV
Protein Properties Length: 332aa    MW: 36781.7 Da    PI: 9.9406
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023549821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51e-104593155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV   + +grW A+I++      ++r++lg+f  +  Aa a++ a+++++g
  XP_023549821.1 45 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNQEHHAANAYDIAALRFRG 93
                    689***9788.8*********3.....5**********99*************98 PP
2B396.22.2e-30168259187
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k+ tpsdv+k++rlv+pk++ae++     g  + +++ l led  g++W+++++y+++s++yvlt+GW++Fvk++ L++gD+v F ++  
  XP_023549821.1 168 FEKTVTPSDVGKLNRLVIPKQHAEKNfpmgeGVGSGKGMLLNLEDMGGKVWRFRYSYWNSSQSYVLTRGWSRFVKEKSLRAGDVVRFLRSTG 259
                     99**************************9995555689*************************************************96543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MDASSIDESS GSDSTSISPV TPLLFHSSPA PGMPHEAESR KLPSSRFKGV VPQPNGRWGA  60
QIYEKHQRVW LGTFNQEHHA ANAYDIAALR FRGRDAVTNF KSLEDDDDND GMEGEFLKSH  120
SKMEIVDMLR KHTYNEELEQ RKRQRGAIAA ANTAVHHSGS DSKREVLFEK TVTPSDVGKL  180
NRLVIPKQHA EKNFPMGEGV GSGKGMLLNL EDMGGKVWRF RYSYWNSSQS YVLTRGWSRF  240
VKEKSLRAGD VVRFLRSTGA DKQLYIDGKA ISEGGVKAIS EGGVKAVHVV KLFGVNILEV  300
PLPVGRCGGE PKNQGVLLEL QPSKKQRIIK AL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-121RAV family protein