PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549451.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 736aa MW: 81281 Da PI: 5.8425

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_023549451.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence
MEPNSSGEDL VFKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALIKG IPVGQTLDID IPPPRPKRKP SNPYPRKTPI SKLGANDGKL 120 LTLVSSSQSK QILDLEKEPL NEATSGEEQA TSEMDTHDDN CSEVFTLSRE ANFFSWKNKN 180 SVPAQVKLNL NDLCAFREFV PSFKELDAKQ PLHDKGRGKV SEFEIASASQ EKIVSVEKKE 240 ALSCVLSGDE MQVAHNYPRH VPVHVVDGSL GANVQESVTD TPLQESSFNP AMEVPGEHNI 300 HRNPSDSVSF ERQNNAPRCI YQSYPTVHPT PFTLLPPNQE NYKSLLHMSS SFSNLVVSTL 360 QQNPAAHAIA SLTATCWPYV NPEASVDSPM CDKESFRTKQ MNSTPSMEAI ATATVAAATA 420 WWAAHGLLPL CAPFHSAFTS SAISAPVAQP SDTCPNPESK DKAESSMQID AEQSEALTAQ 480 HSGSKSPTHS SSDSEGSGGA NANANATVKP AHDEKKPAED EFHDSNKGKR GKQVDRSSCG 540 SNTPSGSDQE IDATENNDKE EKEEKELEMT CPASESSNRR SRCISNINES WKEVSDEVKR 600 GRLAFQALFT RDILPQSFSP SYDVENENEK NENVEKDSNI IDKDSCASVM DLNSKICGPS 660 RDQVMERYTS ATGDNNGEGK ILTIGQGNGT PKGCRTGFKP YKRCSVEAKE KRMTTSSNHS 720 EEGDQKRLRL EQKATN

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence

MEPNSSGEDL VFKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEALIKG IPVGQTLDID IPPPRPKRKP SNPYPRKTPI SKLGANDGKL  120
LTLVSSSQSK QILDLEKEPL NEATSGEEQA TSEMDTHDDN CSEVFTLSRE ANFFSWKNKN  180
SVPAQVKLNL NDLCAFREFV PSFKELDAKQ PLHDKGRGKV SEFEIASASQ EKIVSVEKKE  240
ALSCVLSGDE MQVAHNYPRH VPVHVVDGSL GANVQESVTD TPLQESSFNP AMEVPGEHNI  300
HRNPSDSVSF ERQNNAPRCI YQSYPTVHPT PFTLLPPNQE NYKSLLHMSS SFSNLVVSTL  360
QQNPAAHAIA SLTATCWPYV NPEASVDSPM CDKESFRTKQ MNSTPSMEAI ATATVAAATA  420
WWAAHGLLPL CAPFHSAFTS SAISAPVAQP SDTCPNPESK DKAESSMQID AEQSEALTAQ  480
HSGSKSPTHS SSDSEGSGGA NANANATVKP AHDEKKPAED EFHDSNKGKR GKQVDRSSCG  540
SNTPSGSDQE IDATENNDKE EKEEKELEMT CPASESSNRR SRCISNINES WKEVSDEVKR  600
GRLAFQALFT RDILPQSFSP SYDVENENEK NENVEKDSNI IDKDSCASVM DLNSKICGPS  660
RDQVMERYTS ATGDNNGEGK ILTIGQGNGT PKGCRTGFKP YKRCSVEAKE KRMTTSSNHS  720
EEGDQKRLRL EQKATN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	9e-96	MYB_related family protein