PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549250.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 425aa MW: 47417 Da PI: 10.2726

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3e-08	110	151	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE ++l d+++++ + + Ia +++ +Rt +++k+r++ XP_023549250.1 110 SWTKEETDQLFDLCERFDLR-FVVIADRFPSTRTVEELKERYY 151 7*****************.*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MDAKDILGLP KNTLPLSQEK KPRAQKDAQR KRDGISREVY ALTGGLAPIM PAIDTSELKK 60 RPPSDEKITW QWLPFSNSAR KDNLQLYHWV RVVNGIPPTG DYSFAKYNKS WTKEETDQLF 120 DLCERFDLRF VVIADRFPST RTVEELKERY YHASKAILGA RGPTSREGSG NTPAKDPFNV 180 SQEIERKRAL SMVLSQTKQK ERKDAEVLAE AKKIIESRKA ERVAEESKLA VTSNAVPEVT 240 ERAVVPGESV PSVSNVQPPP PAAVPSTVVA DNASTLASLR MLPVYLRTYA LEQMVHAASS 300 SAGLRTIKRV EQTLQDLSVN LKPRVPTKAV CAEHLELRKE ILTLLNLQKQ LQNKEAEGSS 360 FRESPYSEAP GTPKDRAFIA DSMSFGGERF VKRDQKRKAT GRLSEAPSSP AQSNKRPRKQ 420 KGSDL

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MDAKDILGLP KNTLPLSQEK KPRAQKDAQR KRDGISREVY ALTGGLAPIM PAIDTSELKK  60
RPPSDEKITW QWLPFSNSAR KDNLQLYHWV RVVNGIPPTG DYSFAKYNKS WTKEETDQLF  120
DLCERFDLRF VVIADRFPST RTVEELKERY YHASKAILGA RGPTSREGSG NTPAKDPFNV  180
SQEIERKRAL SMVLSQTKQK ERKDAEVLAE AKKIIESRKA ERVAEESKLA VTSNAVPEVT  240
ERAVVPGESV PSVSNVQPPP PAAVPSTVVA DNASTLASLR MLPVYLRTYA LEQMVHAASS  300
SAGLRTIKRV EQTLQDLSVN LKPRVPTKAV CAEHLELRKE ILTLLNLQKQ LQNKEAEGSS  360
FRESPYSEAP GTPKDRAFIA DSMSFGGERF VKRDQKRKAT GRLSEAPSSP AQSNKRPRKQ  420
KGSDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	32	KKPRAQKDAQRKR
2	391	397	VKRDQKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	1e-178	MYB_related family protein