PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023549223.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C2H2
Protein Properties Length: 304aa    MW: 32963.5 Da    PI: 6.5148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023549223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018114136123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ Fs++  L  H++ H
  XP_023549223.1 114 FSCNFCKREFSTSQALGGHQNAH 136
                     89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MAETGKDDHN SPSEASSISA ASDGGSGSPV TMKMEMIVAE EINGGDRQSQ ESNSRLLLDL  60
KLSNNEESGD GSPEILNSKR IVSSPPPAAA ATVDSSSSQG HANELSSNSK ARVFSCNFCK  120
REFSTSQALG GHQNAHKQER AMAKRRQGME LGSGDNVVGP PYLTSYYNPY SALSPHPLYG  180
SSLGKSLGIR MDSMIHKPSS YRWLGSPALQ FHGRVDSGWA SRPVIVTNNN NNSKLSTFER  240
LKMEGIQIHN GGFRLSTAMN AESIRRFDED RPISIPNLNL SESPVLKMDH HVEDSDEVDL  300
TLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-23C2H2 family protein