PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549212.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 364aa MW: 41488.4 Da PI: 8.1299

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.7	6.4e-28	118	203	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW++vs+ m +e g++rs +Ckek++nl k+ykk+keg+ +r+ + +++++f+qlea XP_023549212.1 118 RWPRQETLTLLEIRSRLDPKFKESNQKGPLWDQVSRMMaEEYGYKRSGRKCKEKFDNLYKYYKKTKEGKTGRH--DGKHYRFFRQLEA 203 8***********************************7788************************985..5557*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MSDKHTHPDL RHLMANEPNF PATAQTLDSF FHHHTHLIRG FSPPPPPKFQ PIPLVLADPA 60 TFPNGQLHFG CSDNSTTTAG GGGAASSAPF SRRNKAVDGE WRPYGNDAVG VSNGANSRWP 120 RQETLTLLEI RSRLDPKFKE SNQKGPLWDQ VSRMMAEEYG YKRSGRKCKE KFDNLYKYYK 180 KTKEGKTGRH DGKHYRFFRQ LEAIYGDGNH QLSSPITGGE NPVEAGGISQ SFSMSSDFET 240 SSSGNYHDDD LSAIAFMMNH RRVEKGREDD MSKGEGVGWR EEVERMVDSK VRRLMEVQEN 300 WMEKIIASVE DGEKERIVKE EEWRKKEVAR FDREMLEFCA RERASVRTRE AAFMEIINKF 360 SGKG

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MSDKHTHPDL RHLMANEPNF PATAQTLDSF FHHHTHLIRG FSPPPPPKFQ PIPLVLADPA  60
TFPNGQLHFG CSDNSTTTAG GGGAASSAPF SRRNKAVDGE WRPYGNDAVG VSNGANSRWP  120
RQETLTLLEI RSRLDPKFKE SNQKGPLWDQ VSRMMAEEYG YKRSGRKCKE KFDNLYKYYK  180
KTKEGKTGRH DGKHYRFFRQ LEAIYGDGNH QLSSPITGGE NPVEAGGISQ SFSMSSDFET  240
SSSGNYHDDD LSAIAFMMNH RRVEKGREDD MSKGEGVGWR EEVERMVDSK VRRLMEVQEN  300
WMEKIIASVE DGEKERIVKE EEWRKKEVAR FDREMLEFCA RERASVRTRE AAFMEIINKF  360
SGKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-59	Trihelix family protein