PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549071.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HSF

Protein Properties

Length: 378aa MW: 43585.7 Da PI: 4.636

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.7	2.1e-34	47	138	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++ei++d +++++isws gnsfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+k+ll++ XP_023549071.1 47 FLTKTFEIVDDFNTDHVISWSFGGNSFVVWDPHCFSTELLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQKHLLKN 132 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr++ XP_023549071.1 133 IKRRRA 138 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MLQEMNPLFS VKEEFPGSNS LGTDRERLAM APPIPMEGLH DAGPPPFLTK TFEIVDDFNT 60 DHVISWSFGG NSFVVWDPHC FSTELLPRFF KHNNFSSFVR QLNTYGFRKI DPDRWEFANE 120 GFLRGQKHLL KNIKRRRATY HHHQTPQSQA ASGACVEVGQ FGVDAEMDRL KRDKQVLMME 180 LVKLRQEQQN TRAYLQAMEQ RLRGTEIKQR QMMNFLARAM QNPSFIQQLL QQKEKRKVLE 240 EAITRKRRRP IQQGGKQSGG GSGRFLGEGS STIKIEPLEP EEYGFGITEL EALALEMQGL 300 GRARHEEEEE EEEEDEEEEE EEEEEEEDHL PPPADGDKVL DEGFWEELFS ERLEVASGDD 360 EDVKVLADRL GYLGSNPR

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MLQEMNPLFS VKEEFPGSNS LGTDRERLAM APPIPMEGLH DAGPPPFLTK TFEIVDDFNT  60
DHVISWSFGG NSFVVWDPHC FSTELLPRFF KHNNFSSFVR QLNTYGFRKI DPDRWEFANE  120
GFLRGQKHLL KNIKRRRATY HHHQTPQSQA ASGACVEVGQ FGVDAEMDRL KRDKQVLMME  180
LVKLRQEQQN TRAYLQAMEQ RLRGTEIKQR QMMNFLARAM QNPSFIQQLL QQKEKRKVLE  240
EAITRKRRRP IQQGGKQSGG GSGRFLGEGS STIKIEPLEP EEYGFGITEL EALALEMQGL  300
GRARHEEEEE EEEEDEEEEE EEEEEEEDHL PPPADGDKVL DEGFWEELFS ERLEVASGDD  360
EDVKVLADRL GYLGSNPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	136	LKNIKRR
2	235	249	KRKVLEEAITRKRRR
3	245	249	RKRRR
4	254	261	GGKQSGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-121	HSF family protein