PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549069.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HSF

Protein Properties

Length: 396aa MW: 45561 Da PI: 4.6489

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.6	2.3e-34	65	156	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++ei++d +++++isws gnsfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+k+ll++ XP_023549069.1 65 FLTKTFEIVDDFNTDHVISWSFGGNSFVVWDPHCFSTELLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQKHLLKN 150 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr++ XP_023549069.1 151 IKRRRA 156 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MNLLFEHRGG ICMVDLYAIV AEMNPLFSVK EEFPGSNSLG TDRERLAMAP PIPMEGLHDA 60 GPPPFLTKTF EIVDDFNTDH VISWSFGGNS FVVWDPHCFS TELLPRFFKH NNFSSFVRQL 120 NTYGFRKIDP DRWEFANEGF LRGQKHLLKN IKRRRATYHH HQTPQSQAAS GACVEVGQFG 180 VDAEMDRLKR DKQVLMMELV KLRQEQQNTR AYLQAMEQRL RGTEIKQRQM MNFLARAMQN 240 PSFIQQLLQQ KEKRKVLEEA ITRKRRRPIQ QGGKQSGGGS GRFLGEGSST IKIEPLEPEE 300 YGFGITELEA LALEMQGLGR ARHEEEEEEE EEDEEEEEEE EEEEEDHLPP PADGDKVLDE 360 GFWEELFSER LEVASGDDED VKVLADRLGY LGSNPR

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MNLLFEHRGG ICMVDLYAIV AEMNPLFSVK EEFPGSNSLG TDRERLAMAP PIPMEGLHDA  60
GPPPFLTKTF EIVDDFNTDH VISWSFGGNS FVVWDPHCFS TELLPRFFKH NNFSSFVRQL  120
NTYGFRKIDP DRWEFANEGF LRGQKHLLKN IKRRRATYHH HQTPQSQAAS GACVEVGQFG  180
VDAEMDRLKR DKQVLMMELV KLRQEQQNTR AYLQAMEQRL RGTEIKQRQM MNFLARAMQN  240
PSFIQQLLQQ KEKRKVLEEA ITRKRRRPIQ QGGKQSGGGS GRFLGEGSST IKIEPLEPEE  300
YGFGITELEA LALEMQGLGR ARHEEEEEEE EEDEEEEEEE EEEEEDHLPP PADGDKVLDE  360
GFWEELFSER LEVASGDDED VKVLADRLGY LGSNPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	LKNIKRR
2	253	267	KRKVLEEAITRKRRR
3	263	267	RKRRR
4	272	279	GGKQSGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-120	HSF family protein