PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548827.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 486aa    MW: 56017 Da    PI: 8.5142
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08431454125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     yk+ +Cr++a  G C+yG++CkF+H
  XP_023548827.1 431 YKQQRCRYYAV-GRCHYGENCKFSH 454
                     99*********.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MAFSGSFVTD PRRFELEEFI DEHGELDDQC DSDDSECDPS YSFEEDTNSK VSRISIRKKS  60
KSSEVEDREL IAQEYLDYVA PEVLNLNEND EKDISEVLSI IKAGKLEKLK VEQCKAYLRK  120
NGLRLTGTKD VLIQRINEHL EILNGGGEKK YPEYSFTVNC KGDACMGDVV MFEQKVYEMY  180
NIASRSSIGP SCGTRTVAGR IVKESYGASK QQHTFTIEVL WSKGEKPLPP LHPLLIKGRN  240
LYRMKTMRQT WEDEGERQKV LMEKHARGSL ARSTREARVV EKEKRKTHNE NRKSRREGFS  300
ENPSQSNLSS AGTMLAETMV KLSVDARKAV HPHQEKTLFG NSGEPPRQHN PTKQSKSDVF  360
IDHSRRPYQL QPMVNPVQNN YFSQPQMKAD PPPVSYNIHP SIYRADHPAS RLAMGQMNLY  420
PKVNQHAEES YKQQRCRYYA VGRCHYGENC KFSHEMAQDF AGREKERLGR HHHHHHQMHQ  480
NARLCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284288KRKTH