PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548826.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 503aa    MW: 57885.1 Da    PI: 8.4568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08448471125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     yk+ +Cr++a  G C+yG++CkF+H
  XP_023548826.1 448 YKQQRCRYYAV-GRCHYGENCKFSH 471
                     99*********.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    
MAFSGSFVTD PRRFELEEFI DEHGELDDQC DSDDSECDPS YSFEEDTNSK VSRISIRKKS  60
KSSEVEDREL IAQEYLDYVA PEVLNLNEND EKDISEVLSI IKVSPCSSHN TFLYHPLSPA  120
GKLEKLKVEQ CKAYLRKNGL RLTGTKDVLI QRINEHLEIL NGGGEKKYPE YSFTVNCKGD  180
ACMGDVVMFE QKVYEMYNIA SRSSIGPSCG TRTVAGRIVK ESYGASKQQH TFTIEVLWSK  240
GEKPLPPLHP LLIKGRNLYR MKTMRQTWED EGERQKVLME KHARGSLARS TREARVVEKE  300
KRKTHNENRK SRREGFSENP SQSNLSSAGT MLAETMVKLS VDARKAVHPH QEKTLFGNSG  360
EPPRQHNPTK QSKSDVFIDH SRRPYQLQPM VNPVQNNYFS QPQMKADPPP VSYNIHPSIY  420
RADHPASRLA MGQMNLYPKV NQHAEESYKQ QRCRYYAVGR CHYGENCKFS HEMAQDFAGR  480
EKERLGRHHH HHHQMHQNAR LCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301305KRKTH