PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548769.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 459aa    MW: 51895.9 Da    PI: 5.6262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.91.2e-94694583374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ecA+a+s++d ++++++L+ l+elasp+gd+ q++a+yf++AL  + ++++ ++yk+l + ++++++ +++l+    f+e+sP+ +f+h++
  XP_023548769.1  69 TLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDTSLKLILKFQEASPWTTFGHVA 163
                     6899**********************************************************9999998888888888888************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledlel 191
                      N aIlea+ege+++HiiD++ + ++QWp+Ll++La+R++++p+l++T+v   ++  k  ++e+g+r++kfA+ +gvpf+fn++   ++l+dl+ 
  XP_023548769.1 164 SNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTT-TTIVKSLMKEIGQRMEKFARLMGVPFDFNPItNLENLTDLTK 257
                     ***************************************************9.6679999***********************94455******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                     e+L+v+++Ea+a+n++ +l r+      +e+ r++v++++ksl+P+v+++ve+ead   ++++Fl+ f e+l++y+  fd+le ++ ++s+er +
  XP_023548769.1 258 EALKVEEDEAIAINCIGALRRVR-----IEE-RNNVISMLKSLKPRVLTIVEEEADFisSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLV 346
                     *********************97.....555.889*********************9867889******************************** PP

            GRAS 285 vErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....................sg 356
                     +Ere  +r+iv ++ c ++e     er+e+ ++W++rl+e+ F+ +++se++ +++k+ll+++k  g+ +  +                    + 
  XP_023548769.1 347 LERE-CSRSIVRLLGCDESEeqmGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYK-PGWALLRRatitttttaaatgevherddDS 439
                     ****.89*********9888333469**************************************.666665444455556666677777777777 PP

            GRAS 357 slv.lgWkdrpLvsvSaWr 374
                     + v l+Wk++p+v+vSaW+
  XP_023548769.1 440 CGVyLTWKEEPVVWVSAWK 458
                     7777**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    
MDITFFTAKE APTTFFNQSH DHHHHLHFSN LDMQSSTSHS SEYSPEQSPS AAAAAAATTL  60
AATGKWSSTL LKECARAISE KDSNKIHHFL WMLNELASPY GDSDQKMASY FLQALFCKAT  120
ETGLTCYKTL VAIADKNHSF DTSLKLILKF QEASPWTTFG HVASNGAILE ALEGETKLHI  180
IDISNTLCTQ WPTLLESLAT RNDDTPHLKL TVVTTTTIVK SLMKEIGQRM EKFARLMGVP  240
FDFNPITNLE NLTDLTKEAL KVEEDEAIAI NCIGALRRVR IEERNNVISM LKSLKPRVLT  300
IVEEEADFIS SKNNFLKCFE ECLRFYTLYF DMLEDSFVTT SNERLVLERE CSRSIVRLLG  360
CDESEEQMGS ERREKGKQWS KRLKESAFSL AEFSEDVLDD VKALLKRYKP GWALLRRATI  420
TTTTTAAATG EVHERDDDSC GVYLTWKEEP VVWVSAWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-138GRAS family protein