PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548698.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 220aa MW: 24680.9 Da PI: 9.1121

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.7	9.3e-09	94	115	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + Cr f+r C yGd+C++ H XP_023548698.1 94 KVCRQFQRRRKCAYGDQCRYLH 115 68******************** PP
2	zf-CCCH	33.4	7.8e-11	175	198	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt+lC + tG C+yG+ C+FaH XP_023548698.1 175 KTRLCYPLQTTGSCPYGSVCRFAH 198 8*********************** PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MSATYRFNEI TPPVPEARGD SSALPPPHSD SGLQQRTMPS KSGIPPSNNR NIGYDHELGC 60 MSTPALNDTH RRLPSLRGIG FHEGPLSGRS NEMKVCRQFQ RRRKCAYGDQ CRYLHEIPEK 120 TRAFGSSTQN YEVRIVDSGH VMNRRRGLDQ LEEVRSKVQT EIVVGGEIPK PVRCKTRLCY 180 PLQTTGSCPY GSVCRFAHEE AGIDIVLVFF VFGENRTTKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	3e-13	C3H family protein