PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023548693.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 265aa MW: 29738.6 Da PI: 9.109 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.4 | 1.2e-08 | 94 | 115 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + Cr f+r C yGd+C++ H XP_023548693.1 94 KVCRQFQRRRKCAYGDQCRYLH 115 68******************** PP | |||||||
2 | zf-CCCH | 33 | 1e-10 | 175 | 198 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt+lC + tG C+yG+ C+FaH XP_023548693.1 175 KTRLCYPLQTTGSCPYGSVCRFAH 198 8*********************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence |
MSATYRFNEI TPPVPEARGD SSALPPPHSD SGLQQRTMPS KSGIPPSNNR NIGYDHELGC 60 MSTPALNDTH RRLPSLRGIG FHEGPLSGRS NEMKVCRQFQ RRRKCAYGDQ CRYLHEIPEK 120 TRAFGSSTQN YEVRIVDSGH VMNRRRGLDQ LEEVRSKVQT EIVVGGEIPK PVRCKTRLCY 180 PLQTTGSCPY GSVCRFAHEE AELQKLEPFI ASQRGSVSDA SATTSAATQA EFGTVCKNEE 240 PRMKQFFKSK KSKRLIAIYA DWLED |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 9e-17 | C3H family protein |