PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548693.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 265aa    MW: 29738.6 Da    PI: 9.109
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-0894115425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     + Cr f+r   C yGd+C++ H
  XP_023548693.1  94 KVCRQFQRRRKCAYGDQCRYLH 115
                     68******************** PP

2zf-CCCH331e-10175198225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     kt+lC   + tG C+yG+ C+FaH
  XP_023548693.1 175 KTRLCYPLQTTGSCPYGSVCRFAH 198
                     8*********************** PP

Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MSATYRFNEI TPPVPEARGD SSALPPPHSD SGLQQRTMPS KSGIPPSNNR NIGYDHELGC  60
MSTPALNDTH RRLPSLRGIG FHEGPLSGRS NEMKVCRQFQ RRRKCAYGDQ CRYLHEIPEK  120
TRAFGSSTQN YEVRIVDSGH VMNRRRGLDQ LEEVRSKVQT EIVVGGEIPK PVRCKTRLCY  180
PLQTTGSCPY GSVCRFAHEE AELQKLEPFI ASQRGSVSDA SATTSAATQA EFGTVCKNEE  240
PRMKQFFKSK KSKRLIAIYA DWLED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-17C3H family protein