PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548638.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 541aa MW: 59246.9 Da PI: 5.6398

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.5	3.8e-16	320	366	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+k Lq XP_023548638.1 320 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKTLQ 366 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MVGRLRMNHC VPDFEMADDF SLPTFSNLTR PRKSSLPDDD VVELLWQNGQ VVTHSQNQRS 60 VRKSPPSKFD GSIPQDQAAV REIRPSAHLE EPHELFMQED EMAAWLNYPL VEDHNFCSDL 120 LFPAISVPLC ANPQPELRPS TTATVTLTPR PPIPPSRIPE AQTSMQFSRN KATGESEPLN 180 SKVMVRESTM VDSCDTPSVG PESRASEMVR RKLVEVVSCG DVRYETARGN GGIGGSSVGG 240 DGIGEKEMTT CEITVTSSPG DSSASAEPPC PKLAADDRKR KGRALDDTEC QSDDVDYESA 300 DLKKQMQGST STKRSRAAEV HNLSERRRRD RINEKMKALQ ELIPRCNKTD KASMLDEAIE 360 YLKTLQLQVQ MMSMGCGMMP MMFPGVQQYL PQPMGMGMGM GMGMGMGMEM GMNRPMMQFH 420 NLLAGSNLPM QAGAAAAAAA AHMGPRFPLP PFATSPVPDS DPSRAQATNN QLNPMANSVG 480 TQNATPPSVS GFPDSYQQFL SSNQMPFHMT QPLQNHQPVQ PNTIRPGTSQ VPENHENHQS 540 G

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MVGRLRMNHC VPDFEMADDF SLPTFSNLTR PRKSSLPDDD VVELLWQNGQ VVTHSQNQRS  60
VRKSPPSKFD GSIPQDQAAV REIRPSAHLE EPHELFMQED EMAAWLNYPL VEDHNFCSDL  120
LFPAISVPLC ANPQPELRPS TTATVTLTPR PPIPPSRIPE AQTSMQFSRN KATGESEPLN  180
SKVMVRESTM VDSCDTPSVG PESRASEMVR RKLVEVVSCG DVRYETARGN GGIGGSSVGG  240
DGIGEKEMTT CEITVTSSPG DSSASAEPPC PKLAADDRKR KGRALDDTEC QSDDVDYESA  300
DLKKQMQGST STKRSRAAEV HNLSERRRRD RINEKMKALQ ELIPRCNKTD KASMLDEAIE  360
YLKTLQLQVQ MMSMGCGMMP MMFPGVQQYL PQPMGMGMGM GMGMGMGMEM GMNRPMMQFH  420
NLLAGSNLPM QAGAAAAAAA AHMGPRFPLP PFATSPVPDS DPSRAQATNN QLNPMANSVG  480
TQNATPPSVS GFPDSYQQFL SSNQMPFHMT QPLQNHQPVQ PNTIRPGTSQ VPENHENHQS  540
G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	325	330	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	2e-74	bHLH family protein