PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548608.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 322aa    MW: 36555.7 Da    PI: 7.2586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-12186211126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd CkF+H+
  XP_023548608.1 186 YQPDICKDYKETGYCGYGDACKFMHD 211
                     67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MTDTGENQQP EQVCSFFKKP TKNKNIRKRT VDEDEEDSKS SETSVLQNQK KAPKTDSKLY  60
FSSGPSKSNL TNESNVESDK PIFQFESSKE IQVHHDSRAT ATLETETDFS RDARAIRERV  120
LKQAEEALKG KGKSSGGEKL YKGVNAYVDY KAGFRREHTI SSEKAGGAHG PLRASAHIRA  180
SARFDYQPDI CKDYKETGYC GYGDACKFMH DRGDYKSGWQ LEKEWEEVEK ARKRKLAMKS  240
DDGDEDAAEQ SDEDEEDALP FACFICREPF VDPVVTKCKH YFCEHCALKH HAKNKKCFVC  300
NQPTLGIFNT AHEIKKKMAE SK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-154C3H family protein