PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548362.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 724aa    MW: 78616.4 Da    PI: 6.144
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3221.2e-983757233374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++L++++e +++g+  laq +Larl+++ +sp g+p+qR+a+yf+eAL++ l++         +ps+ s+ + + ++aa+k fsevsP+l+f+++
  XP_023548362.1 375 DQLFKAVELIETGNSVLAQGILARLNHQlSSPIGKPFQRAAFYFKEALQSLLQN-------PSNPSNPSPLSIIFKIAAYKSFSEVSPVLQFANF 462
                     79************************998************************9.......44555555566*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.e 190
                     t Nqa+lea++g+ r+HiiDfdi++G+QW++L+q+La R  gpp l+iT+++s ++++  el  t+e+L++fA+ l++ fe +++  ++l++   
  XP_023548362.1 463 TSNQALLEAFNGSGRIHIIDFDIGYGGQWASLMQELALR--GPPFLKITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEIINIESLNSGsW 555
                     **************************************9..9*************99***************************97777766513 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     + +L v+++Ea+aVnl +   +l+            +L+++k+l+Pk+vv v++ +++ +++F +r+++ l+ ysal++s+ea    + +++ k+
  XP_023548362.1 556 PLALYVSENEAIAVNLPVGSLSLP-----------MILRFIKHLNPKIVVSVDRGCSRVDAPFPHRVIHGLHSYSALLESMEAV-TVNMDAQLKI 638
                     56788999**********887776...........59********************************************776.46789***** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er l+++ i++vv+ ++ +    +e+l   ++++ ++GF+p+++s+++++qa++ll++++++g+++++++ slvl+W++++Lvs+SaWr
  XP_023548362.1 639 ERYLVQPCIEKVVTSSQCS----NERLPPLKSMFLSSGFSPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWR 723
                     ***************9998....9999999**********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    
MKAMPFPYPF DDLRSNGVLN FSSVSDSSPP PFRRHNHRQY WSSTDNTNLL KQICYVGAAE  60
PTSVLDTRRS PSPPTSTSTL SSSLGGGCGG GGTASTDTTV AAPQSSLPEN PSPLDKCGGG  120
GGLGMDDWES VLPESPGQGP SILGLIMGDV EDPSLGLNKL LQSGGGGGGV GGGGGGGDSH  180
LDLEFSGSFS GVDHGLVFEP NTLAGESIVD PSLQAPSYAR LSAAVSNSNA MFSGVFQNQN  240
QLSETVDEKP QIFNSPQVMM NQNQTQFTHN PPLFMPLPFA SPGQDHHQNH HHFLGGVPPT  300
KWFNSGPIPP NYPVKSPFLD SGQENINRRQ QQQQQPQQVQ LFPHQQQRPS MAALAKQKMV  360
NEDIANQQLQ QGISDQLFKA VELIETGNSV LAQGILARLN HQLSSPIGKP FQRAAFYFKE  420
ALQSLLQNPS NPSNPSPLSI IFKIAAYKSF SEVSPVLQFA NFTSNQALLE AFNGSGRIHI  480
IDFDIGYGGQ WASLMQELAL RGPPFLKITA FASTSTHDDF ELGFTQENLK NFANDLNIGF  540
ELEIINIESL NSGSWPLALY VSENEAIAVN LPVGSLSLPM ILRFIKHLNP KIVVSVDRGC  600
SRVDAPFPHR VIHGLHSYSA LLESMEAVTV NMDAQLKIER YLVQPCIEKV VTSSQCSNER  660
LPPLKSMFLS SGFSPLTFSN FTESQAECLL QRTPVQGFHI DKRHSSLVLC WHRKELVSIS  720
AWRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-142GRAS family protein