PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548067.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-other

Protein Properties

Length: 1058aa MW: 117531 Da PI: 9.8254

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.4	7.7e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g++ +qV+ +F +R + +k XP_023548067.1 69 KRPRDLLNPKAVKYMQTVFSIKDALSKKESREISALFGVKVAQVRDFFNSQRSRVRK 125 799**************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1058 aa Download sequence
MEVLKDDLSN LEIGNSAESF QKFLDSQKDL FRSQVDQLQR IVVTQCKLTG VNPLSQEMAA 60 GALSITIGKR PRDLLNPKAV KYMQTVFSIK DALSKKESRE ISALFGVKVA QVRDFFNSQR 120 SRVRKLVRLS REKSIQSSSC KQLEAGGIAI DNDPSMPIDA VPLNSAAVVP FNSDAPIQLN 180 SEAPVPLNID TPVPLNTIKP SNVDNGPSCS TQDSELSGID GIDKHFVQTI FSMMQKEETF 240 SGQVKLMEWI LQIQNSSVLC WFLTKGGAII LATWLSQAAV EEQTSLLHVI LEVFCHLPLH 300 KALPVHISAI LQSVNNLRFY RTSDISNRAR FLLSRWSKLL TRSQALKKPN GMKLLTNSQT 360 DTILKQSIGD IMYDESWKSN IDVPENFSSS IVNVDNTRKL ESHQALKLLP ASSDDLHRKN 420 VLGLSSSRFR ERRKIQMVEQ PEQKSTARNS QAPRTSPVSR GRPMSTDDIQ KAKMRAQFMQ 480 SKYGKTGSSN GRMKSENVNK PLPLVSGASS AAPKTTFLHP KFEDQKKAMV LSPKISNKVE 540 TPLHSKIEVG FKDSLGEKCK RVQIQWRMPP EMKHNDLWRV GGGENSKEAG FQNIRNSREK 600 ETFYQTILDI PSNPKEPWDL EMDYDDSLTP EVLTEQLPDN ESSETEVRNH VVDAAVPSEV 660 ISSQDPKPNA DEPDLELLAV LLKNPELVYA LTSSQAGNLP AEETVKLLDM IKASGASNLG 720 SVNRMEKAVE KVEVSLPSPT PSSNAGTSGW KPAALRNPFS QRDSIAESRV ALASPPVDAS 780 SIAVSRVPNQ QHAAMPSVSH QLPASVSQFS LPQTMINGRQ SHHVLHSHQH QQGIVNSPNV 840 QLPNSEIALA LRSFPITNEP LVNQLTAAVS SVRVEGGNVV KPVTFASNIP ERVPISFHSP 900 PSPTPTRMPL IQQQRQQSQI QPFRSEHPHQ TRVNISLPPS EKSAPSLGSW KPRQQDIGSH 960 YNSGTNQRND SKFVGGSMAA RGGPSWGRNE FESWSPENSP VRTQEYSRPD KSISEPRTNS 1020 GRSYGPADQQ QRQRSPYGYQ EQNRHGTNNN RRWRDRQF

Sequence ? help Back to Top

Protein Sequence Length: 1058 aa Download sequence

MEVLKDDLSN LEIGNSAESF QKFLDSQKDL FRSQVDQLQR IVVTQCKLTG VNPLSQEMAA  60
GALSITIGKR PRDLLNPKAV KYMQTVFSIK DALSKKESRE ISALFGVKVA QVRDFFNSQR  120
SRVRKLVRLS REKSIQSSSC KQLEAGGIAI DNDPSMPIDA VPLNSAAVVP FNSDAPIQLN  180
SEAPVPLNID TPVPLNTIKP SNVDNGPSCS TQDSELSGID GIDKHFVQTI FSMMQKEETF  240
SGQVKLMEWI LQIQNSSVLC WFLTKGGAII LATWLSQAAV EEQTSLLHVI LEVFCHLPLH  300
KALPVHISAI LQSVNNLRFY RTSDISNRAR FLLSRWSKLL TRSQALKKPN GMKLLTNSQT  360
DTILKQSIGD IMYDESWKSN IDVPENFSSS IVNVDNTRKL ESHQALKLLP ASSDDLHRKN  420
VLGLSSSRFR ERRKIQMVEQ PEQKSTARNS QAPRTSPVSR GRPMSTDDIQ KAKMRAQFMQ  480
SKYGKTGSSN GRMKSENVNK PLPLVSGASS AAPKTTFLHP KFEDQKKAMV LSPKISNKVE  540
TPLHSKIEVG FKDSLGEKCK RVQIQWRMPP EMKHNDLWRV GGGENSKEAG FQNIRNSREK  600
ETFYQTILDI PSNPKEPWDL EMDYDDSLTP EVLTEQLPDN ESSETEVRNH VVDAAVPSEV  660
ISSQDPKPNA DEPDLELLAV LLKNPELVYA LTSSQAGNLP AEETVKLLDM IKASGASNLG  720
SVNRMEKAVE KVEVSLPSPT PSSNAGTSGW KPAALRNPFS QRDSIAESRV ALASPPVDAS  780
SIAVSRVPNQ QHAAMPSVSH QLPASVSQFS LPQTMINGRQ SHHVLHSHQH QQGIVNSPNV  840
QLPNSEIALA LRSFPITNEP LVNQLTAAVS SVRVEGGNVV KPVTFASNIP ERVPISFHSP  900
PSPTPTRMPL IQQQRQQSQI QPFRSEHPHQ TRVNISLPPS EKSAPSLGSW KPRQQDIGSH  960
YNSGTNQRND SKFVGGSMAA RGGPSWGRNE FESWSPENSP VRTQEYSRPD KSISEPRTNS  1020
GRSYGPADQQ QRQRSPYGYQ EQNRHGTNNN RRWRDRQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein