PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023547825.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family NF-YA
Protein Properties Length: 348aa    MW: 38923.6 Da    PI: 7.5245
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023547825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.8e-33180236158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +ksrkpylheSRh hA+rR+RgsgGrF
  XP_023547825.1 180 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKSRKPYLHESRHLHAMRRARGSGGRF 236
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MPSKPENVDQ QIVDGSKYLV QSTKYSEAWW HGVGNNTIAG EDATKTASAD YLNDTVSSGG  60
TQSQANGIRF IAIIVINSIY LTKNTQFKRY IEPVLDLDEN IGKEVQHLKY IPFSTSPPVG  120
ERLDLNSQME LVGHSIVLTS YPFSDAQYCQ MLTSNGPQST FPHIYGLHHA RMPLPLEMEE  180
EPVYVNAKQY HGILRRRQSR AKAELEKKVI KSRKPYLHES RHLHAMRRAR GSGGRFLNTK  240
KPNNVISNTD REEGINSGTN HSTKPVNEAG SKYMGADENG IKDTLNEEDK EFMTQNLQIT  300
RAFFNGKLNG HGISTYTSQL ADVEGGHLDQ PHESMQVNGA PQRAIPIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.24e-32NF-YA family protein