PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547451.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 496aa MW: 54067.6 Da PI: 8.7224

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023547451.1 94 FVCEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP
2	zf-C2H2	11.2	0.0011	171	193	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_023547451.1 171 WKCDKCSKKYAVQSDWKAHSKIC 193 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MMMKGNFLSQ QQHQQHQVLM DENLSNLTSA SGEATASVSS ANHYFDPQSQ HPPPPPPPPP 60 PPPPKKKRNL PGNPDPDAEV IALSPRTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW 120 KLKQRSNKEV VKKKVYVCPE SSCVHHDPSR ALGDLTGIKK HFYRKHGEKK WKCDKCSKKY 180 AVQSDWKAHS KICGTKEYRC DCGTLFSRRD SFITHRAFCD ALADESARSA MALNPLISSY 240 NNNNNNFVIK RDFSNGNNMR AEIPPWLHSN DLRGEIFIGS CQDEHPHQNH ETLNPNGHGH 300 GHGCGASIGL PPPSSYQCSS VSSPHISATA LLQKAAQMGA TMSSTTTTSG SMQRPHKMVH 360 VSTGDYGQIG GGAVSCSSSC TDYGHKAAAV SASEPATFLH DMINSLSSAS ASHPFLQDSS 420 FNDVTAFPAM HHHIVPATAT TTVTAASGGR SDGLTRDFLG LRPLSHGDIL SLTGFGNCIV 480 PNSSNLQSQI QKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MMMKGNFLSQ QQHQQHQVLM DENLSNLTSA SGEATASVSS ANHYFDPQSQ HPPPPPPPPP  60
PPPPKKKRNL PGNPDPDAEV IALSPRTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW  120
KLKQRSNKEV VKKKVYVCPE SSCVHHDPSR ALGDLTGIKK HFYRKHGEKK WKCDKCSKKY  180
AVQSDWKAHS KICGTKEYRC DCGTLFSRRD SFITHRAFCD ALADESARSA MALNPLISSY  240
NNNNNNFVIK RDFSNGNNMR AEIPPWLHSN DLRGEIFIGS CQDEHPHQNH ETLNPNGHGH  300
GHGCGASIGL PPPSSYQCSS VSSPHISATA LLQKAAQMGA TMSSTTTTSG SMQRPHKMVH  360
VSTGDYGQIG GGAVSCSSSC TDYGHKAAAV SASEPATFLH DMINSLSSAS ASHPFLQDSS  420
FNDVTAFPAM HHHIVPATAT TTVTAASGGR SDGLTRDFLG LRPLSHGDIL SLTGFGNCIV  480
PNSSNLQSQI QKPWQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-105	C2H2 family protein