PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023547181.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family CO-like
Protein Properties Length: 337aa    MW: 36996.3 Da    PI: 5.8497
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023547181.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.5e-08436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  ++lfC+ ++ +lC  C +e H  
  XP_023547181.1  4 KLCDSCKSATATLFCRADSAFLCLGCDSEVHAA 36
                    68*****************************54 PP
2zf-B_box24.17.7e-084691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     + C+ +e+ +++  C+ +   lC  C   +H+       H++vp+
  XP_023547181.1 46 VWLCEVCEQAPAHVTCKADAAALCLACDHDIHSAnplarrHERVPV 91
                    679*****************************66899999*99986 PP
3CCT70.44.4e-24276319144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_023547181.1 276 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 319
                     9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MASKLCDSCK SATATLFCRA DSAFLCLGCD SEVHAANKLA SRHARVWLCE VCEQAPAHVT  60
CKADAAALCL ACDHDIHSAN PLARRHERVP VTPFYDTSNS ENSLAVKPGA AINFLDDRYF  120
SDVDADAADV SREEAEAASW LLPNPNPKAI ESPDLNSGKF EFPEMDPYLD LDYGHVDPKL  180
EAQEQNSSGA DGVVPDQTKG VHLSSVNDRC FNIDFPGAKS FPYGFNPQSI SHSVSSSSVE  240
VGVVPDGNAM TDVSNPYTKP STESSIQPLQ ISPADREARV LRYREKRKNR KFEKTIRYAS  300
RKAYAETRPR IKGRFAKRTD IELEVDRVSG YGVVPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-127CO-like family protein