PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547121.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 635aa MW: 68963.7 Da PI: 6.8814

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.5	3.7e-14	269	328	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_023547121.1 269 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEQKAARAYDLAALKYWG 328 57*****************666664478446******99***********98 PP
2	AP2	46.9	7.1e-15	371	422	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_023547121.1 371 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 422 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MASINWLGFS LSPQHHQHQL PHHPHAVSAA AFTTDQISAS DVPAVCFDNL PSSYGVYDSQ 60 DWNSVKGLGQ TQSSDFSGLI DTHHQPKLEN FLGHHSFTDH DHAAAAVVYT NASANYIFQN 120 CSLELPSEPN GGSGDGGGRP NPSNGNGNGN GNYTSSIGLS MIKTWLRNQP APPQAVAKSG 180 GDHDGAIGKP NITNPHTLSL SMNTGPPPPP PPSQSSDLEA LPLLITNGGE SSSSNKKQPK 240 SSATEVDTDN GPIEAVPRKS MDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK 300 GRQVYLGGYD KEQKAARAYD LAALKYWGTT TTTNFPISDY EKELEDMKHM TRQEFVASLR 360 RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF 420 RGLNAVTNFD MTRYDVKAIL ESNTLPIGGA AKRLKDIDHS DIPLHPQSTD ENISSHLSNG 480 IITSGGGGWP TLAFHHHHPY ASHYPYGALQ QRLWCKQEND VSAGNFLDSM DQSSGSSSVV 540 YSRDGYGGNF VIPMGAEGGG LGDIGEVNMF GGGCNVDDPF HATRTSNLYN YNNSSHQLQQ 600 PPPELQGSSG NNWLPPARSV CHGGTPPPFT IWNDT

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MASINWLGFS LSPQHHQHQL PHHPHAVSAA AFTTDQISAS DVPAVCFDNL PSSYGVYDSQ  60
DWNSVKGLGQ TQSSDFSGLI DTHHQPKLEN FLGHHSFTDH DHAAAAVVYT NASANYIFQN  120
CSLELPSEPN GGSGDGGGRP NPSNGNGNGN GNYTSSIGLS MIKTWLRNQP APPQAVAKSG  180
GDHDGAIGKP NITNPHTLSL SMNTGPPPPP PPSQSSDLEA LPLLITNGGE SSSSNKKQPK  240
SSATEVDTDN GPIEAVPRKS MDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK  300
GRQVYLGGYD KEQKAARAYD LAALKYWGTT TTTNFPISDY EKELEDMKHM TRQEFVASLR  360
RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF  420
RGLNAVTNFD MTRYDVKAIL ESNTLPIGGA AKRLKDIDHS DIPLHPQSTD ENISSHLSNG  480
IITSGGGGWP TLAFHHHHPY ASHYPYGALQ QRLWCKQEND VSAGNFLDSM DQSSGSSSVV  540
YSRDGYGGNF VIPMGAEGGG LGDIGEVNMF GGGCNVDDPF HATRTSNLYN YNNSSHQLQQ  600
PPPELQGSSG NNWLPPARSV CHGGTPPPFT IWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-128	AP2 family protein