PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546923.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 372aa MW: 42316.2 Da PI: 8.9013

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.8	1e-24	76	119	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e XP_023546923.1 76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119 79***************************************987 PP
2	QLQ	57.1	5.5e-20	8	40	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FTaaQ+q+L++Q+l++Ky++++ PvPp+Ll a XP_023546923.1 8 PFTAAQWQELEHQALIFKYMVSGIPVPPDLLYA 40 8*****************************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MSARNRLPFT AAQWQELEHQ ALIFKYMVSG IPVPPDLLYA MKRSSLDTPF ISRLFPHQYP 60 DVGWNFVQMG SGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEV 120 LKPTTTITAL TSNPSTPPIS SITHNSTASL STNSFPSEIH THSCFNTPPP PHPFLYQHGS 180 FSRPPGSAHL QHNSNPSLLL DPPADYRRNR YVYAGKEDVD KHPFLSEEHS GNMRGFSASS 240 MEDPWQLTPL TMSCSSSSPR HKNCSALQGD YSSYLQLQSF GGSPKQVKQD EHYYAVGKYN 300 EMQSKMDREK PEKTMHHFFG EWSPKDRESW VDLDDKSSNT GAVSETRLSM SILNSSQHDF 360 SSIFSSNKHN EN

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MSARNRLPFT AAQWQELEHQ ALIFKYMVSG IPVPPDLLYA MKRSSLDTPF ISRLFPHQYP  60
DVGWNFVQMG SGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEV  120
LKPTTTITAL TSNPSTPPIS SITHNSTASL STNSFPSEIH THSCFNTPPP PHPFLYQHGS  180
FSRPPGSAHL QHNSNPSLLL DPPADYRRNR YVYAGKEDVD KHPFLSEEHS GNMRGFSASS  240
MEDPWQLTPL TMSCSSSSPR HKNCSALQGD YSSYLQLQSF GGSPKQVKQD EHYYAVGKYN  300
EMQSKMDREK PEKTMHHFFG EWSPKDRESW VDLDDKSSNT GAVSETRLSM SILNSSQHDF  360
SSIFSSNKHN EN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	3e-55	GRF family protein