PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546921.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 398aa MW: 45208.5 Da PI: 8.6767

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.7	1.1e-24	103	146	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e XP_023546921.1 103 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 146 79***************************************987 PP
2	QLQ	57	6e-20	8	40	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FTaaQ+q+L++Q+l++Ky++++ PvPp+Ll a XP_023546921.1 8 PFTAAQWQELEHQALIFKYMVSGIPVPPDLLYA 40 8*****************************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MSARNRLPFT AAQWQELEHQ ALIFKYMVSG IPVPPDLLYA MKRSSLDTPF ISRLFPHQYP 60 DGNTSYFSVL TRIIHYDAQV LGLYCVCAVG WNFVQMGSGR KIDPEPGRCR RTDGKKWRCS 120 KEAYPDSKYC ERHMHRGKNR SRKPVEVLKP TTTITALTSN PSTPPISSIT HNSTASLSTN 180 SFPSEIHTHS CFNTPPPHPF LYQHGSFSRP PGSAHLQHNS NPSLLLDPPA DYRRNRYVYA 240 GKEDVDKHPF LSEEHSGNMR GFSASSMEDP WQLTPLTMSC SSSSPRHKNC SALQGDYSSY 300 LQLQSFGGSP KQVKQDEHYY AVGKYNEMQS KMDREKPEKT MHHFFGEWSP KDRESWVDLD 360 DKSSNTGAVS ETRLSMSILN SSQHDFSSIF SSNKHNEN

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MSARNRLPFT AAQWQELEHQ ALIFKYMVSG IPVPPDLLYA MKRSSLDTPF ISRLFPHQYP  60
DGNTSYFSVL TRIIHYDAQV LGLYCVCAVG WNFVQMGSGR KIDPEPGRCR RTDGKKWRCS  120
KEAYPDSKYC ERHMHRGKNR SRKPVEVLKP TTTITALTSN PSTPPISSIT HNSTASLSTN  180
SFPSEIHTHS CFNTPPPHPF LYQHGSFSRP PGSAHLQHNS NPSLLLDPPA DYRRNRYVYA  240
GKEDVDKHPF LSEEHSGNMR GFSASSMEDP WQLTPLTMSC SSSSPRHKNC SALQGDYSSY  300
LQLQSFGGSP KQVKQDEHYY AVGKYNEMQS KMDREKPEKT MHHFFGEWSP KDRESWVDLD  360
DKSSNTGAVS ETRLSMSILN SSQHDFSSIF SSNKHNEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-51	GRF family protein