PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546831.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-other

Protein Properties

Length: 453aa MW: 50444.5 Da PI: 5.2966

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546831.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.5	9.6e-08	402	435	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 + +yp++e++++L +++gL+ +q+ +WF N+R + XP_023546831.1 402 NWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 435 469*****************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MAFRNQLSQD LPLHYENQSQ PERPLSDNTL RSILSDQLAD HSPADDGSKP EHPLQSTPNW 60 LNSALLRNQA PHSHFSDETT ATAADNVDTD FLNLHTTAAN SAVSHPSGQW LSRAILHRDH 120 SDVLDEVADA ADAMIGATTL SRESDDLKNN SSGGDGEGVN NSDDVAVESD GNEGAYGGDA 180 ATNWQNARFK AEILAHPLYE QLLSAHVACL RIATPVDQLP RVDSQLARSQ NVAAKYSSFG 240 HRSQPIAGNG KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVYACWEIE QSLQSLTGVS 300 PGEGTGATMS DDDEDQIDSD ANLFDGSFEG HDAMGFGPLI PTDSERSLME RVRHELKHEL 360 KNQGYKEKIL DIREEILRKR RAGKLPGDTT SVLKAWWQSH SNWPYPTEED KAKLVQETGL 420 QLKQINNWFI NQRKRNWHTN PSTSTTLKTK RKR

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MAFRNQLSQD LPLHYENQSQ PERPLSDNTL RSILSDQLAD HSPADDGSKP EHPLQSTPNW  60
LNSALLRNQA PHSHFSDETT ATAADNVDTD FLNLHTTAAN SAVSHPSGQW LSRAILHRDH  120
SDVLDEVADA ADAMIGATTL SRESDDLKNN SSGGDGEGVN NSDDVAVESD GNEGAYGGDA  180
ATNWQNARFK AEILAHPLYE QLLSAHVACL RIATPVDQLP RVDSQLARSQ NVAAKYSSFG  240
HRSQPIAGNG KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVYACWEIE QSLQSLTGVS  300
PGEGTGATMS DDDEDQIDSD ANLFDGSFEG HDAMGFGPLI PTDSERSLME RVRHELKHEL  360
KNQGYKEKIL DIREEILRKR RAGKLPGDTT SVLKAWWQSH SNWPYPTEED KAKLVQETGL  420
QLKQINNWFI NQRKRNWHTN PSTSTTLKTK RKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	433	453	RKRNWHTNPSTSTTLKTKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-162	TALE family protein