PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546638.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HSF

Protein Properties

Length: 382aa MW: 42314.7 Da PI: 6.5885

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.1	4.5e-36	86	177	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Flkk+ye++ed+e++ ++swse gnsf+v+d+++++ ++LpkyFkhsnf+SF+RQLn+YgF+k+++++ weF+++ F+ gkk+ll++ XP_023546638.1 86 FLKKTYEMVEDPETDPVVSWSEGGNSFIVWDSHKLSITLLPKYFKHSNFSSFIRQLNTYGFRKIDSDK---------WEFANEGFQGGKKHLLKN 171 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+++ XP_023546638.1 172 IKRRSR 177 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MINQTTLSGG GGGGGGGGGC PDGAATASGD IMDQRSVKEE EMEVSTETMG GGGGESDCGG 60 GGDGGWASSA TAKPMEGLHE VGPAPFLKKT YEMVEDPETD PVVSWSEGGN SFIVWDSHKL 120 SITLLPKYFK HSNFSSFIRQ LNTYGFRKID SDKWEFANEG FQGGKKHLLK NIKRRSRYNS 180 YKKQQQQHHL GMPMGLQDLS KHSLVEAELQ ALKSDNNILR VEMLKLREQQ QDSQNQLTMV 240 EDRVRCVESK HQQMLSFVSK MSRNPGFCRQ LVQRRMLRKK LMNNGDEFGN NRRLLAMQGH 300 QNLTHSELLS TEMFPQAIEP GPVVLEPPVR ASTMVDEDSD SKFFLELEDL IQKPPPPPPP 360 PQDCPSAYVK QQAFHGFVGS IP

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MINQTTLSGG GGGGGGGGGC PDGAATASGD IMDQRSVKEE EMEVSTETMG GGGGESDCGG  60
GGDGGWASSA TAKPMEGLHE VGPAPFLKKT YEMVEDPETD PVVSWSEGGN SFIVWDSHKL  120
SITLLPKYFK HSNFSSFIRQ LNTYGFRKID SDKWEFANEG FQGGKKHLLK NIKRRSRYNS  180
YKKQQQQHHL GMPMGLQDLS KHSLVEAELQ ALKSDNNILR VEMLKLREQQ QDSQNQLTMV  240
EDRVRCVESK HQQMLSFVSK MSRNPGFCRQ LVQRRMLRKK LMNNGDEFGN NRRLLAMQGH  300
QNLTHSELLS TEMFPQAIEP GPVVLEPPVR ASTMVDEDSD SKFFLELEDL IQKPPPPPPP  360
PQDCPSAYVK QQAFHGFVGS IP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	175	LKNIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-78	HSF family protein