PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546561.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 345aa MW: 38241.9 Da PI: 7.8978

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.5	2.3e-08	91	115	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f G C+ G++C+FaHg XP_023546561.1 91 FKTRMCAKFKL-GLCRNGASCNFAHG 115 69*******.***********9 PP
2	zf-CCCH	30.9	4.8e-10	150	174	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +k++lCr f+ + +C+yGdrC+F H XP_023546561.1 150 QKMKLCRKFYNGEECPYGDRCNFLH 174 5999*****66********** PP
3	zf-CCCH	41	3.3e-13	236	262	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ XP_023546561.1 236 WKTKLCTKWEITGHCPFGEKCHFAHGQ 262 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSFNDMRGSV IPPPLHSYGA NGDASGCWSQ YPRNDLFDPQ SQFEVQQPPF KRARTFEENQ 60 SSPMPYPNPP SNSRVQPPNA PMNKGINNIF FKTRMCAKFK LGLCRNGASC NFAHGVEDVR 120 QPPPNWQEIV GIREDDQSVS NWNDDQKIIQ KMKLCRKFYN GEECPYGDRC NFLHEDPAKF 180 RDDSGRFRES SAISIGTTGT PLINGSDSSY PEPIKAASSS VPDALRANGN SRPSFWKTKL 240 CTKWEITGHC PFGEKCHFAH GQSELQLSIG REGEVSNTAL NVKPLVVAME APSSLAASVP 300 SSALPEGQAK QSLLKWKGPK KINRIYADWL DDLPLSPSST SQLEG

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSFNDMRGSV IPPPLHSYGA NGDASGCWSQ YPRNDLFDPQ SQFEVQQPPF KRARTFEENQ  60
SSPMPYPNPP SNSRVQPPNA PMNKGINNIF FKTRMCAKFK LGLCRNGASC NFAHGVEDVR  120
QPPPNWQEIV GIREDDQSVS NWNDDQKIIQ KMKLCRKFYN GEECPYGDRC NFLHEDPAKF  180
RDDSGRFRES SAISIGTTGT PLINGSDSSY PEPIKAASSS VPDALRANGN SRPSFWKTKL  240
CTKWEITGHC PFGEKCHFAH GQSELQLSIG REGEVSNTAL NVKPLVVAME APSSLAASVP  300
SSALPEGQAK QSLLKWKGPK KINRIYADWL DDLPLSPSST SQLEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	7e-89	C3H family protein