PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023546525.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | CO-like | ||||||||
Protein Properties | Length: 401aa MW: 45777.8 Da PI: 7.9885 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26 | 1.9e-08 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C ++ +lC+ C + H+ H++v XP_023546525.1 17 ARPCESCIIKRARWYCAADDAFLCQACDASVHSAnslarrHERV 60 678*****************************657788888876 PP | |||||||
2 | CCT | 68.6 | 1.7e-23 | 346 | 389 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+FeKkirYe+RK +Ae+RpR+KGrFvk++ XP_023546525.1 346 REARVSRYREKRRTRLFEKKIRYEVRKLNAEKRPRMKGRFVKRS 389 9*****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence |
MMPRKSVQKT AEGGKTARPC ESCIIKRARW YCAADDAFLC QACDASVHSA NSLARRHERV 60 RLPTVSYRPS SDNSSAASWH QGFTRKPRSP RMGKTAPMRK PFPQVPEVSA KEETEDQEQL 120 LLYRVPELGT DSKVGNLFSF VGEKENSNGY LSYHMDPAEF AADVESLLGK SLNNKCLDME 180 ELGLAASKDH STTKDDYSLN SHELIRIEQD EIEKLTPMLS AEADTMREPF ELNFMDFGRN 240 PTTCGEENKV MMEVKEVVKK GELEMEETKI VNNKKKVSLS LDSEAVIMAW GSRGTPWMSD 300 DGPNLDFNYH WLDYMGTWES EYYYQAFGEV SGGIRRQAAA GVEGEREARV SRYREKRRTR 360 LFEKKIRYEV RKLNAEKRPR MKGRFVKRSS CFAPPPLPLF N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 357 | 373 | RRTRLFEKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 6e-70 | CO-like family protein |