PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546415.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 330aa MW: 37654.3 Da PI: 10.0697

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.7	9.3e-16	51	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_023546415.1 51 SRFRGVSRHRWTGRFEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 110 789****************988855556447***********************98 PP
2	AP2	57.3	3.8e-18	153	204	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g XP_023546415.1 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 204 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MDFTVLNSEF CSFKTDSVAV NCIRRRRRSC KGSRQPPKSP ADQSTATKRS SRFRGVSRHR 60 WTGRFEAHLW DKGSWNPTQR KKGKQVYLGA YDEEESAARA YDLAALKYWG TSTFTNFSVS 120 DYENEIKIMK RVTKEEYLAS LRRRSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL 180 YLGTYGTQEE AARAYDIAAI EYRGLNAVTN FELSSYIRWL KPNPMQPSPP LSFSIDTNTT 240 SNNAFTPTAP RTSPRTALGL LLKSSLFKHL MEKNVVNVNG DVEMEEEYPM DEGRALLSFV 300 EPNPYLHLQY SCQGTTNLSL STPFHYSALA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	85	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-82	AP2 family protein