PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023546306.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | GATA | ||||||||
Protein Properties | Length: 328aa MW: 35959.2 Da PI: 5.0323 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.9 | 4.4e-16 | 204 | 240 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ XP_023546306.1 204 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 240 *******99*************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence |
MAAANPQPLQ ARPFQEHVQV PTMMGNDDGE YEDDGGGGGG GDVMDDVEGA HMTSVSVVKH 60 GGLVMASRTS ELTLSFEGEV YVFPAVTPEK VQAVLLLLGG CDVPTGVPTM DVPYDDNNRG 120 MVDTPKRSNL SRRIASLVRF REKRKERCFD KKIRYTVRKE VAQRMHRKNG QFASLKEGSR 180 ASSWESAHSC LQDGSRSETV LRKCQHCGVS ENNTPAMRRG PAGPRTLCNA CGLMWANKGT 240 LRDLSKGGRN VSLDHMEPET PMDVKPTIME GEFSGIQDEH DINETTVELT NSLPMQIANH 300 STNGDEQEPL IELANPSDTD IDIPTNFD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 128 | DTPKRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-72 | GATA family protein |