PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023546305.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 352aa    MW: 38415.8 Da    PI: 4.7171
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023546305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.8e-16204240135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_023546305.1 204 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 240
                     *******99*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MAAANPQPLQ ARPFQEHVQV PTMMGNDDGE YEDDGGGGGG GDVMDDVEGA HMTSVSVVKH  60
GGLVMASRTS ELTLSFEGEV YVFPAVTPEK VQAVLLLLGG CDVPTGVPTM DVPYDDNNRG  120
MVDTPKRSNL SRRIASLVRF REKRKERCFD KKIRYTVRKE VAQRMHRKNG QFASLKEGSR  180
ASSWESAHSC LQDGSRSETV LRKCQHCGVS ENNTPAMRRG PAGPRTLCNA CGLMWANKGT  240
LRDLSKGGRN VSLDHMEPET PMDVKPTIME GEFSGIQDEH GTPEDPGKTM TEGSSNPSLD  300
PVEEDINETT VELTNSLPMQ IANHSTNGDE QEPLIELANP SDTDIDIPTN FD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128DTPKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-72GATA family protein