PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023546217.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 651aa    MW: 71435.1 Da    PI: 5.2602
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023546217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.63.4e-1362896501374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lLl+cAeav+++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla  + +++k ++p +  +kns e l+++++ ++++P++kf+h
  XP_023546217.1 289 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALSARLAA-TFTTAKPISPIPPFPKNSLEILKIYQIVYQACPYVKFAH 382
                     68****************************************************9.77788888888888899********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      ++++etg+ L+++A++l+vpfef++ + ++le+l+
  XP_023546217.1 383 FTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGSPFLRITGVGP----VIDAVQETGRCLTELAHSLNVPFEFHA-IGEQLEALK 472
                     ******************************************************....99*************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++++ + gEalaVn+v +lhr++    sl +    +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kv
  XP_023546217.1 473 PNMFNRRVGEALAVNVVNRLHRVP--GKSLGN----LLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKV 561
                     ***********************9..455555....*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ ++++ei+n+vacegaer+erhe+l+kWr+ +e+ GFk v+ls++a++q + ll  ++ dgyr+ e++g+l+lgW+dr+L+++SaWr
  XP_023546217.1 562 EQYIFAPEIRNIVACEGAERIERHERLAKWRKLMETKGFKGVALSSNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRALIAASAWR 650
                     ****************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    
MINSLCGSIA PSNSTETSSS SKPPPPTSPN EAVSAKTAAV SSSDSLTPAS LSFRAPKFEI  60
DGDIEIQSPD NSVWDSLFAD QLDCDFMISS PVRSLPSPHN LGFNYYNYGQ AMQCSPPRSC  120
SQVGASSSVH KGKGLSPLHK VFSSPSNQYM QAIEGTSSLP TIGELLDDYE EPEGFETFQN  180
LSKISGIGES LQFYDISTSS LPPVFEDLAV PNESSTMDRE FFTQMGSITT APLPQQDQQQ  240
LQPLPLPPPA PSPLPLPPPK QPQNQLNHSL MVPLPVVGSE QEQDSGLQLV HLLLACAEAV  300
AKEDYMLARR YLHHLNRVVT PIGDSMQRVA SCFTEALSAR LAATFTTAKP ISPIPPFPKN  360
SLEILKIYQI VYQACPYVKF AHFTANQAIF EAFEAEERVH VIDLDILQGY QWPAFMQALA  420
ARPGGSPFLR ITGVGPVIDA VQETGRCLTE LAHSLNVPFE FHAIGEQLEA LKPNMFNRRV  480
GEALAVNVVN RLHRVPGKSL GNLLAMIRDQ APNIVTLVEQ EASHNGPYFL GRFLEALHYY  540
SAIFDSLDAT FPPESAQRAK VEQYIFAPEI RNIVACEGAE RIERHERLAK WRKLMETKGF  600
KGVALSSNAV TQSRILLGLY SCDGYRLTED KGCLLLGWQD RALIAASAWR C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-102GRAS family protein