PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546109.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-other

Protein Properties

Length: 1042aa MW: 117768 Da PI: 6.7069

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.3	1.1e-12	6	55	7	56
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 t++ql++L +++ +++yp++++ + A+ lgLt rqV+ WF +R +++ XP_023546109.1 6 KTPQQLQALDAFYSEEKYPTQSRLKTYAATLGLTYRQVQGWFAQKRRRDR 55 699*******************************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1042 aa Download sequence
MEFRRKTPQQ LQALDAFYSE EKYPTQSRLK TYAATLGLTY RQVQGWFAQK RRRDRSEDET 60 TVSSTGEWLQ ENQRETKVRK VSKQTSSVHV DCCGKMAAPI KTHGIGKGLM TVWQATNPDA 120 GKFPAGINFS GRELMDASSV STSSSEESLR QGKRPPRQAK VKGRQASKVQ GKRKPSTKNR 180 RVERNGEKSQ KQFCYEKCEL AWERKKSQGC IDQFATLVDD EELELRELQA GKHIMASCDH 240 FMANDVNSCS LCKDMLAKFP PNSVKMKQPF GIQSWDSSLD IGKKLFKAFN FLYTYAITLG 300 ICPFTLDEFA QAFYDKNSFL LGKIHMALLK LLFCDIEAEF SNAYLTPLSK SCKFLALVHS 360 LGSRDFALDI WKKSLNPLTW TEILRQVFVA AGFCSKQGAL QKETLSKEMN LMVKYGLQRG 420 TLKGELFIIL SEQGNNGIKV SDLTRESKIV DLNVAGTTEE LELQICSTLS SDITLFEKIS 480 SSAYRVRPSP ATMDVDEIQS DTDFGSVDDI VANASICSSS YDSECDSENL CSQRTKIQKS 540 NNENPTVFME IDVSHPGEAW LLGLMEDEYS GLSIEEKLNA LVALIDLLSY GSSIKPKGTS 600 TSCAIDYASD IRRYGSGAKI KKSSVRGHNL SGSFLTSSGQ LHGANIRYVS LEHHPIDSTT 660 TISEFHENSV CQGNGANKMG DSIYLHPMQS IFLGSDRRYN RYWLFLGPCN ASDPGHRRVY 720 FESSEDGHWE VIDTEEALWA LLSVLDDRGK REAYLIESLE KRVAFLCEAM SNYSTTNLVS 780 RSFTQSEQSD MDRIRESSYS PVSDVDNSLN QAETTGDMLP SCSAIVLDVK RKGEEEKQSW 840 NCLQEFDSWV WNFFYHALYA VRHGKRSYLD SLARCESCHD LYWRDEKHCK VCHMTFELDF 900 NLEERYTIHR ATCREKEDDD VFPKHKVLSS QFQSLKAAVH AIESVMPEGA MVGAWTKSAH 960 KLWIKRLRRT SSLTELLQVV ADFVGAMNED WFYNFPEGSS VDFRDTLASF ASLPQTTSAL 1020 AFWLVKLDAF LNCFLWKDLK GS

Sequence ? help Back to Top

Protein Sequence Length: 1042 aa Download sequence

MEFRRKTPQQ LQALDAFYSE EKYPTQSRLK TYAATLGLTY RQVQGWFAQK RRRDRSEDET  60
TVSSTGEWLQ ENQRETKVRK VSKQTSSVHV DCCGKMAAPI KTHGIGKGLM TVWQATNPDA  120
GKFPAGINFS GRELMDASSV STSSSEESLR QGKRPPRQAK VKGRQASKVQ GKRKPSTKNR  180
RVERNGEKSQ KQFCYEKCEL AWERKKSQGC IDQFATLVDD EELELRELQA GKHIMASCDH  240
FMANDVNSCS LCKDMLAKFP PNSVKMKQPF GIQSWDSSLD IGKKLFKAFN FLYTYAITLG  300
ICPFTLDEFA QAFYDKNSFL LGKIHMALLK LLFCDIEAEF SNAYLTPLSK SCKFLALVHS  360
LGSRDFALDI WKKSLNPLTW TEILRQVFVA AGFCSKQGAL QKETLSKEMN LMVKYGLQRG  420
TLKGELFIIL SEQGNNGIKV SDLTRESKIV DLNVAGTTEE LELQICSTLS SDITLFEKIS  480
SSAYRVRPSP ATMDVDEIQS DTDFGSVDDI VANASICSSS YDSECDSENL CSQRTKIQKS  540
NNENPTVFME IDVSHPGEAW LLGLMEDEYS GLSIEEKLNA LVALIDLLSY GSSIKPKGTS  600
TSCAIDYASD IRRYGSGAKI KKSSVRGHNL SGSFLTSSGQ LHGANIRYVS LEHHPIDSTT  660
TISEFHENSV CQGNGANKMG DSIYLHPMQS IFLGSDRRYN RYWLFLGPCN ASDPGHRRVY  720
FESSEDGHWE VIDTEEALWA LLSVLDDRGK REAYLIESLE KRVAFLCEAM SNYSTTNLVS  780
RSFTQSEQSD MDRIRESSYS PVSDVDNSLN QAETTGDMLP SCSAIVLDVK RKGEEEKQSW  840
NCLQEFDSWV WNFFYHALYA VRHGKRSYLD SLARCESCHD LYWRDEKHCK VCHMTFELDF  900
NLEERYTIHR ATCREKEDDD VFPKHKVLSS QFQSLKAAVH AIESVMPEGA MVGAWTKSAH  960
KLWIKRLRRT SSLTELLQVV ADFVGAMNED WFYNFPEGSS VDFRDTLASF ASLPQTTSAL  1020
AFWLVKLDAF LNCFLWKDLK GS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	2e-94	HB-other family protein