PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023546027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | GRAS | ||||||||
Protein Properties | Length: 613aa MW: 66970.6 Da PI: 4.9917 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 450.3 | 1.3e-137 | 239 | 605 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cAeav++++++ a+al++++ la +++ +m+++a+yf+eALa+r++r +y+ +s ++ l++ f+e++P+lkf+h XP_023546027.1 239 LVHTLMACAEAVQQENMKIAEALVKHIGLLAVSQAGAMRKVATYFAEALARRIYR----IYSPQDGFYSS---YADILQM--HFYETCPYLKFAH 324 689****************************************************....77544333333...4444333..5************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p++g +++l+++g++La++Ae++gv+fefn +v+++l++l XP_023546027.1 325 FTANQAILEAFASASRVHVIDFSLNQGMQWPALMQALALRPGGPPTFRLTGIGPPKQGnTADSLQQVGWKLAQMAEAIGVEFEFNQIVCSNLANL 419 ********************************************************99999********************************** PP GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..e 280 ++ +L+++p Ea+aVn+v+ lhrll++++++e+ vL +k ++Pk+v++veqea+hn+ F++rf+eal+yys +fdsle++ + + XP_023546027.1 420 NPAALEIRPpaVEAVAVNSVFDLHRLLARPGAIEK----VLGSIKATKPKIVTIVEQEANHNGRVFMDRFTEALHYYSNMFDSLEVSSTGFEpaS 510 *********999***********************....*********************************************87754333459 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++ +++++lgr+i+nvvaceg +r+erhe+l +Wr r+e+aGF+pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW+++pL+++SaW+ XP_023546027.1 511 EDVLLSEVYLGRQICNVVACEGPDRVERHESLTHWRTRMESAGFNPVHLGSNAFKQASMLLALFAgGEGYRVEENNGCLMLGWHTQPLIATSAWQ 605 9*********************************************************************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence |
MKMKMKRELE DDRSTGGGVY GGGRQGVGKG ECSSVLSGKV KMWEEEEEQE VGGGGMDELL 60 AVLGYKVRAS DMADVAQKME QLEMVMGSVK EDGISHLASD TVHYNPSDLS AWIQNMLSEF 120 NNTPNHFNSS SISTPPPQSS QYSNPHSRIQ SRPSRLYDDD SEYDLSAIPG VAVFPSKDSS 180 TEIETNSRKR VKIEGESSVN LLPPSPPFVA AAAAAGIVSE PSRPVVVVEE GSQDAGIQLV 240 HTLMACAEAV QQENMKIAEA LVKHIGLLAV SQAGAMRKVA TYFAEALARR IYRIYSPQDG 300 FYSSYADILQ MHFYETCPYL KFAHFTANQA ILEAFASASR VHVIDFSLNQ GMQWPALMQA 360 LALRPGGPPT FRLTGIGPPK QGNTADSLQQ VGWKLAQMAE AIGVEFEFNQ IVCSNLANLN 420 PAALEIRPPA VEAVAVNSVF DLHRLLARPG AIEKVLGSIK ATKPKIVTIV EQEANHNGRV 480 FMDRFTEALH YYSNMFDSLE VSSTGFEPAS EDVLLSEVYL GRQICNVVAC EGPDRVERHE 540 SLTHWRTRME SAGFNPVHLG SNAFKQASML LALFAGGEGY RVEENNGCLM LGWHTQPLIA 600 TSAWQLDADE STQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 0.0 | GRAS family protein |