PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023545546.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 945aa MW: 105084 Da PI: 5.2018

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023545546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.2	1.8e-18	38	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_023545546.1 38 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84 799**************************9.**********986 PP
2	Myb_DNA-binding	65.6	9.1e-21	90	136	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_023545546.1 90 KGPWSKEEDETIVELVQKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 136 79****************************.***********97 PP
3	Myb_DNA-binding	48.7	1.7e-15	142	184	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_023545546.1 142 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 184 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence
MERDPPVCTP SDVPGDSGRS IQALHSRRTS GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN 60 WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDET IVELVQKYGP KKWSTIAQHL 120 PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE LALIRAHQIY GNRWAELTKF LPGRTDNAIK 180 NHWNSSVKKK LDSYLASGLL EQYQPLHHHA LQSSLPILSS SRVQSSIDDS CLRGTETEDI 240 SEVTQTSATV PRTKEECQLA EDVLIKEETN STPHCLEQYH GSLDDITFSI PEMLRELGCY 300 AKPPNQNLSQ DCRTSSTGDN QYNLYELPNI SSLELGQELS QFQAIGSQEV ENTSHQTSAG 360 LSASTVENMA RASDKPEHML ISDYECCRVL FSDAINNESF LSESTTDARD MVEPSGYAHP 420 LQCRSSSTEM PESNRNLSLQ SEVLDNSCSQ RFLAPLLVSA NDDTYVYTSE TSHLFESLEQ 480 ELVGDGQNGF IYTNESANSP PNDGLKNTEL QKQQGSNDSS KLVPVDTFSS EPKTAESFPS 540 FSGRENTHSD QQDLRALCYE PPRFPSLDVP FLSCDLAPSA SDMQQEYSPL GIRQLMMSSM 600 NCLTPFKPWN SPSRDDSPVA VLKSAAKTFT NTPSILKKRH RELLSPLSDK RCDKKQEIDV 660 GISRTSQSNT INSRNSEGKE NISPDSCSFQ ENKMQELVGQ IVQQPSRILV ECDSNDEISE 720 IPCSRTSTAL QDQEFPKFSN DHCAVANCSV ASGTSHGSRP PTATVPPEVI GDNASKESSI 780 EPATIFGGTP FNRSIESPSA WKSPWFINSF LFGSRMDTDV PMEDVGYLMS PGDRSYDAIG 840 LMKQVGEHTA AACANAQEVL GNETPQSLLK GRRGKYENQT KEKSHLSNSL QGVRSTLTLD 900 IMTERRILDF SECGTPGKAT ENGKSSTSTA RSFSSPSSYL LKGCR

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence

MERDPPVCTP SDVPGDSGRS IQALHSRRTS GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDET IVELVQKYGP KKWSTIAQHL  120
PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE LALIRAHQIY GNRWAELTKF LPGRTDNAIK  180
NHWNSSVKKK LDSYLASGLL EQYQPLHHHA LQSSLPILSS SRVQSSIDDS CLRGTETEDI  240
SEVTQTSATV PRTKEECQLA EDVLIKEETN STPHCLEQYH GSLDDITFSI PEMLRELGCY  300
AKPPNQNLSQ DCRTSSTGDN QYNLYELPNI SSLELGQELS QFQAIGSQEV ENTSHQTSAG  360
LSASTVENMA RASDKPEHML ISDYECCRVL FSDAINNESF LSESTTDARD MVEPSGYAHP  420
LQCRSSSTEM PESNRNLSLQ SEVLDNSCSQ RFLAPLLVSA NDDTYVYTSE TSHLFESLEQ  480
ELVGDGQNGF IYTNESANSP PNDGLKNTEL QKQQGSNDSS KLVPVDTFSS EPKTAESFPS  540
FSGRENTHSD QQDLRALCYE PPRFPSLDVP FLSCDLAPSA SDMQQEYSPL GIRQLMMSSM  600
NCLTPFKPWN SPSRDDSPVA VLKSAAKTFT NTPSILKKRH RELLSPLSDK RCDKKQEIDV  660
GISRTSQSNT INSRNSEGKE NISPDSCSFQ ENKMQELVGQ IVQQPSRILV ECDSNDEISE  720
IPCSRTSTAL QDQEFPKFSN DHCAVANCSV ASGTSHGSRP PTATVPPEVI GDNASKESSI  780
EPATIFGGTP FNRSIESPSA WKSPWFINSF LFGSRMDTDV PMEDVGYLMS PGDRSYDAIG  840
LMKQVGEHTA AACANAQEVL GNETPQSLLK GRRGKYENQT KEKSHLSNSL QGVRSTLTLD  900
IMTERRILDF SECGTPGKAT ENGKSSTSTA RSFSSPSSYL LKGCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein