PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023545090.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 297aa    MW: 31161.3 Da    PI: 9.5836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023545090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-063558225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_023545090.1 35 KSKPCTKFFSTAGCPFGESCHFLH 58
                    6789******************** PP
2zf-CCCH25.81.9e-08101126227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ f     Ck+Gd+C+FaHg+
  XP_023545090.1 101 KTRMCNKFNSAEGCKFGDKCNFAHGE 126
                     899*********************96 PP
3zf-CCCH38.22.4e-12264288126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC++fa+ G C +G+rC+FaHg
  XP_023545090.1 264 YKTKLCDNFAK-GSCTFGERCHFAHG 288
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MDMRKRGRPE AAFNSNGSFK KHKQELESLS TVGGKSKPCT KFFSTAGCPF GESCHFLHYV  60
PGGYNAVAQM MNLAPVGSQP SRNMAAPPVT NGGSSAPSQI KTRMCNKFNS AEGCKFGDKC  120
NFAHGEWELG RPTPPSHDNP RGMGGHMVGR MGGRMDLPPP GPAASFGASA TAKISIDASL  180
AGAIIGKGGI NSKQICRQTG AKLSIRDHES DPNLRNIELE GTFEQINEAS AMVRELIITV  240
SMSGPGKAHG AMGGGGPAPS GSNYKTKLCD NFAKGSCTFG ERCHFAHGAA ELRKSGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-54C3H family protein