PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544959.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 497aa MW: 53483 Da PI: 9.1571

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_023544959.1 6 FICEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.8	0.00037	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_023544959.1 82 WKCDKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK DPKRKVYLCP EPTCVHHHPS 60 RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 120 DSFITHRAFC DALAQESSRH PPSIGRHLYG AQENPNIINQ SAPGHFTHLL PSSMGSSFRP 180 MSASPPFFLT EQNNQSSFHE DQPNQSQQGF FGNKGFHGVM QFPDIQSHTN NCASNVFNLG 240 FIPNSTSEGT TNLSNNNDTN TITTNLNQFS ATNNANNQAA ASNIFAVIGD QMNSAALPSL 300 YSNASAVGGG GGSGIGGSFP HMSATALLQK AAQLGSTTSS TNTTSTLLRS FGSSSNSGGK 360 ASDRTLFPLS YGGVTFGEHE SNLQDMMNSF GSGSSGSGMF GSGMNSFGGL ECSSSRTNME 420 TLEDPKLQQD VRGVRMGGTD RLTRDFLGVG QIVRSMSGGG GGGYSQKQGA EGIVLEGNER 480 NSAPSSQGFG GGNGNYQ

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK DPKRKVYLCP EPTCVHHHPS  60
RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESSRH PPSIGRHLYG AQENPNIINQ SAPGHFTHLL PSSMGSSFRP  180
MSASPPFFLT EQNNQSSFHE DQPNQSQQGF FGNKGFHGVM QFPDIQSHTN NCASNVFNLG  240
FIPNSTSEGT TNLSNNNDTN TITTNLNQFS ATNNANNQAA ASNIFAVIGD QMNSAALPSL  300
YSNASAVGGG GGSGIGGSFP HMSATALLQK AAQLGSTTSS TNTTSTLLRS FGSSSNSGGK  360
ASDRTLFPLS YGGVTFGEHE SNLQDMMNSF GSGSSGSGMF GSGMNSFGGL ECSSSRTNME  420
TLEDPKLQQD VRGVRMGGTD RLTRDFLGVG QIVRSMSGGG GGGYSQKQGA EGIVLEGNER  480
NSAPSSQGFG GGNGNYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.2	1e-101	C2H2 family protein