PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544951.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 551aa MW: 59035.2 Da PI: 9.3788

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_023544951.1 60 FICEVCNKGFQREQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	12.6	0.00041	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_023544951.1 136 WKCDKCSKRYAVQSDWKAHSKTC 158 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MAASSSSSLP VYGVGEEASP QMRPPSSSST KKKRNQPGTP NPDAEVIALS PKTLMATNRF 60 ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSTKDPKRKV YLCPEPTCVH HHPSRALGDL 120 TGIKKHYSRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH 180 RAFCDALAQE SSRHPPSIGR HLYGAQENPN IINQSAPGHF THLLPSSMGS SFRPMSASPP 240 FFLTEQNNQS SFHEDQPNQS QQGFFGNKGF HGVMQFPDIQ SHTNNCASNV FNLGFIPNST 300 SEGTTNLSNN NDTNTITTNL NQFSATNNAN NQAAASNIFA VIGDQMNSAA LPSLYSNASA 360 VGGGGGSGIG GSFPHMSATA LLQKAAQLGS TTSSTNTTST LLRSFGSSSN SGGKASDRTL 420 FPLSYGGVTF GEHESNLQDM MNSFGSGSSG SGMFGSGMNS FGGLECSSSR TNMETLEDPK 480 LQQDVRGVRM GGTDRLTRDF LGVGQIVRSM SGGGGGGYSQ KQGAEGIVLE GNERNSAPSS 540 QGFGGGNGNY Q

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MAASSSSSLP VYGVGEEASP QMRPPSSSST KKKRNQPGTP NPDAEVIALS PKTLMATNRF  60
ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSTKDPKRKV YLCPEPTCVH HHPSRALGDL  120
TGIKKHYSRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH  180
RAFCDALAQE SSRHPPSIGR HLYGAQENPN IINQSAPGHF THLLPSSMGS SFRPMSASPP  240
FFLTEQNNQS SFHEDQPNQS QQGFFGNKGF HGVMQFPDIQ SHTNNCASNV FNLGFIPNST  300
SEGTTNLSNN NDTNTITTNL NQFSATNNAN NQAAASNIFA VIGDQMNSAA LPSLYSNASA  360
VGGGGGSGIG GSFPHMSATA LLQKAAQLGS TTSSTNTTST LLRSFGSSSN SGGKASDRTL  420
FPLSYGGVTF GEHESNLQDM MNSFGSGSSG SGMFGSGMNS FGGLECSSSR TNMETLEDPK  480
LQQDVRGVRM GGTDRLTRDF LGVGQIVRSM SGGGGGGYSQ KQGAEGIVLE GNERNSAPSS  540
QGFGGGNGNY Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-116	C2H2 family protein