PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544943.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 554aa MW: 59462.7 Da PI: 9.4479

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_023544943.1 63 FICEVCNKGFQREQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	12.6	0.00042	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_023544943.1 139 WKCDKCSKRYAVQSDWKAHSKTC 161 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MAASSSSSLP VYGVGEEASP QMRPPSSSST KKKRNQPGTP SKYYPDAEVI ALSPKTLMAT 60 NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSTKDPK RKVYLCPEPT CVHHHPSRAL 120 GDLTGIKKHY SRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF 180 ITHRAFCDAL AQESSRHPPS IGRHLYGAQE NPNIINQSAP GHFTHLLPSS MGSSFRPMSA 240 SPPFFLTEQN NQSSFHEDQP NQSQQGFFGN KGFHGVMQFP DIQSHTNNCA SNVFNLGFIP 300 NSTSEGTTNL SNNNDTNTIT TNLNQFSATN NANNQAAASN IFAVIGDQMN SAALPSLYSN 360 ASAVGGGGGS GIGGSFPHMS ATALLQKAAQ LGSTTSSTNT TSTLLRSFGS SSNSGGKASD 420 RTLFPLSYGG VTFGEHESNL QDMMNSFGSG SSGSGMFGSG MNSFGGLECS SSRTNMETLE 480 DPKLQQDVRG VRMGGTDRLT RDFLGVGQIV RSMSGGGGGG YSQKQGAEGI VLEGNERNSA 540 PSSQGFGGGN GNYQ

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MAASSSSSLP VYGVGEEASP QMRPPSSSST KKKRNQPGTP SKYYPDAEVI ALSPKTLMAT  60
NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSTKDPK RKVYLCPEPT CVHHHPSRAL  120
GDLTGIKKHY SRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AQESSRHPPS IGRHLYGAQE NPNIINQSAP GHFTHLLPSS MGSSFRPMSA  240
SPPFFLTEQN NQSSFHEDQP NQSQQGFFGN KGFHGVMQFP DIQSHTNNCA SNVFNLGFIP  300
NSTSEGTTNL SNNNDTNTIT TNLNQFSATN NANNQAAASN IFAVIGDQMN SAALPSLYSN  360
ASAVGGGGGS GIGGSFPHMS ATALLQKAAQ LGSTTSSTNT TSTLLRSFGS SSNSGGKASD  420
RTLFPLSYGG VTFGEHESNL QDMMNSFGSG SSGSGMFGSG MNSFGGLECS SSRTNMETLE  480
DPKLQQDVRG VRMGGTDRLT RDFLGVGQIV RSMSGGGGGG YSQKQGAEGI VLEGNERNSA  540
PSSQGFGGGN GNYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-113	C2H2 family protein