PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544817.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 665aa MW: 73210.8 Da PI: 6.7511

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.3	6.8e-24	120	221	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + + XP_023544817.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfppldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFL--RAE 210 89**************************996555555..89*******************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_023544817.1 211 NGDLCVGIRRA 221 8999**997 PP
2	Auxin_resp	111.2	1e-36	264	346	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 aa+ a+++++Fe+v++Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gtv +v+ +dp+rWp+S+Wr+L XP_023544817.1 264 AATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTVNSVQVADPLRWPESPWRLL 346 68899****************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence
MITFMDSKEK SKEMDKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH ACASPVDFRT 60 CPKLPSYTLC RVSAIKFLAD PDTDEVFAKL RLIPINGSEL DFDDGIGRLN GSEQDKPTSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPPLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP 180 RRHLLTTGWS SFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGAGDGPD SSCGWNGAVP 240 YGAFSANESL MGKGKVKAKS VIEAATLAAN GQPFEIVFYP RASTPEFCVK AALVKAALQI 300 RWCSGMRFKM AFETEDSSRI SWFMGTVNSV QVADPLRWPE SPWRLLLVTW DEPDLLQNVK 360 RVSPWLVESV SNMSPIHIAP FSSPRKKLRY PQHPDFPLDN QPPMPLFSSY LHGSGSPFGC 420 PPDNNSAGMQ GARHAHFGLS LSDFHLSKLH SGLFPIGYRS PDPAAESATL SCNAMTEKPS 480 MSENVSCLLT MAHSTQASKK CDGVKTPQLI LFGRPILTEL HMSQTYSGDT VSSVGTGNSS 540 PDGNGDRTEK RVDGSGSSLH QQRPLEGSSC ENFQCYKDDR QEVEPNVDPG HCKVFMESED 600 VGRTLDLSSL GSYEELYTKL GNMFDIDNSE TLNHVLYRDV SGAVKHVGDE QFSDFIKTAR 660 RLTIL

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence

MITFMDSKEK SKEMDKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH ACASPVDFRT  60
CPKLPSYTLC RVSAIKFLAD PDTDEVFAKL RLIPINGSEL DFDDGIGRLN GSEQDKPTSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPPLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP  180
RRHLLTTGWS SFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGAGDGPD SSCGWNGAVP  240
YGAFSANESL MGKGKVKAKS VIEAATLAAN GQPFEIVFYP RASTPEFCVK AALVKAALQI  300
RWCSGMRFKM AFETEDSSRI SWFMGTVNSV QVADPLRWPE SPWRLLLVTW DEPDLLQNVK  360
RVSPWLVESV SNMSPIHIAP FSSPRKKLRY PQHPDFPLDN QPPMPLFSSY LHGSGSPFGC  420
PPDNNSAGMQ GARHAHFGLS LSDFHLSKLH SGLFPIGYRS PDPAAESATL SCNAMTEKPS  480
MSENVSCLLT MAHSTQASKK CDGVKTPQLI LFGRPILTEL HMSQTYSGDT VSSVGTGNSS  540
PDGNGDRTEK RVDGSGSSLH QQRPLEGSSC ENFQCYKDDR QEVEPNVDPG HCKVFMESED  600
VGRTLDLSSL GSYEELYTKL GNMFDIDNSE TLNHVLYRDV SGAVKHVGDE QFSDFIKTAR  660
RLTIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein