PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544760.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 515aa MW: 54461.1 Da PI: 8.4843

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023544760.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	11.2	0.0012	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_023544760.1 132 WKCDKCSKKYAVQSDWKAHSKIC 154 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MPADEKDSSM ASGKASVSSP GAKSATKKKR NLPGMPDPEA EVIALSPKTL FATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKKVYVCP ESSCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSWR DSFIRHRAFC 180 DALAKESSKA QPMPVDKPDL HSDPDGDSQS AAVKPSLEPS PPPPPPPPPP SSPPVSSPPQ 240 STEPSENPSQ CTEEAPGTPG LSRSSSSSNK SASSNSSSRS SGFAGLFASS MTSRSLQPPR 300 PPGFTDLMQA MACSDRSSDY ASSSTIEPTS LCLAMNQGPS IFRTASQDLR QYAPTPQPAM 360 SATALLQKAA QIGATASNAS LLRGLGLVSS SSSLAAQQEN LPWNHQSHGQ PDGISIAAGL 420 GLGLPCDGNS GLKELMMGNH AMFPPKHTTL DFLGLGMAAD GSPNSGLAAL ITSVGSGVDV 480 GVTTLSYDGS GVDVGVTTLS YSGSGDISEK KTETE

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MPADEKDSSM ASGKASVSSP GAKSATKKKR NLPGMPDPEA EVIALSPKTL FATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKKVYVCP ESSCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSWR DSFIRHRAFC  180
DALAKESSKA QPMPVDKPDL HSDPDGDSQS AAVKPSLEPS PPPPPPPPPP SSPPVSSPPQ  240
STEPSENPSQ CTEEAPGTPG LSRSSSSSNK SASSNSSSRS SGFAGLFASS MTSRSLQPPR  300
PPGFTDLMQA MACSDRSSDY ASSSTIEPTS LCLAMNQGPS IFRTASQDLR QYAPTPQPAM  360
SATALLQKAA QIGATASNAS LLRGLGLVSS SSSLAAQQEN LPWNHQSHGQ PDGISIAAGL  420
GLGLPCDGNS GLKELMMGNH AMFPPKHTTL DFLGLGMAAD GSPNSGLAAL ITSVGSGVDV  480
GVTTLSYDGS GVDVGVTTLS YSGSGDISEK KTETE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-102	C2H2 family protein