PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544759.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 527aa MW: 55667.5 Da PI: 8.3859

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023544759.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	11.1	0.0012	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_023544759.1 132 WKCDKCSKKYAVQSDWKAHSKIC 154 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MPADEKDSSM ASGKASVSSP GAKSATKKKR NLPGMPDPEA EVIALSPKTL FATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKKVYVCP ESSCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSWR DSFIRHRAFC 180 DALAKESSKA QPMPVDKPDL HSDPDGDSQS AAVKPSLEPS PPPPPPPPPP SSPPVSSPPQ 240 STGELITALP VPSQEPSENP SQCTEEAPGT PGLSRSSSSS NKSASSNSSS RSSGFAGLFA 300 SSMTSRSLQP PRPPGFTDLM QAMACSDRSS DYASSSTIEP TSLCLAMNQG PSIFRTASQD 360 LRQYAPTPQP AMSATALLQK AAQIGATASN ASLLRGLGLV SSSSSLAAQQ ENLPWNHQSH 420 GQPDGISIAA GLGLGLPCDG NSGLKELMMG NHAMFPPKHT TLDFLGLGMA ADGSPNSGLA 480 ALITSVGSGV DVGVTTLSYD GSGVDVGVTT LSYSGSGDIS EKKTETE

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MPADEKDSSM ASGKASVSSP GAKSATKKKR NLPGMPDPEA EVIALSPKTL FATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKKVYVCP ESSCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSWR DSFIRHRAFC  180
DALAKESSKA QPMPVDKPDL HSDPDGDSQS AAVKPSLEPS PPPPPPPPPP SSPPVSSPPQ  240
STGELITALP VPSQEPSENP SQCTEEAPGT PGLSRSSSSS NKSASSNSSS RSSGFAGLFA  300
SSMTSRSLQP PRPPGFTDLM QAMACSDRSS DYASSSTIEP TSLCLAMNQG PSIFRTASQD  360
LRQYAPTPQP AMSATALLQK AAQIGATASN ASLLRGLGLV SSSSSLAAQQ ENLPWNHQSH  420
GQPDGISIAA GLGLGLPCDG NSGLKELMMG NHAMFPPKHT TLDFLGLGMA ADGSPNSGLA  480
ALITSVGSGV DVGVTTLSYD GSGVDVGVTT LSYSGSGDIS EKKTETE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-102	C2H2 family protein