PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544755.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 346aa MW: 39441.8 Da PI: 5.7939

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544755.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.5	3.7e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl XP_023544755.1 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.5	2.6e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_023544755.1 67 RGRFSFEEEEAIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRTPCCEKE GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEEAIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKKLLRMG 120 IDPVTHNPRL DVLDLSSILG SSFYNNPNSQ INSFSRLIGI HNRLANSFMS FNNMSHFSMQ 180 NVENHEQSNM IISQSQLLPP QQPHYQIDQS PALPPLHEAS AGCSPSTTTS CGGEAYLFPS 240 SNFSDFYSQN CQQQTQELNG FDYSECALPS YDFYKQEQEQ EQVHQQVIEP SPETSTLNSS 300 PTPLNSNSTY FSTANGNGTD QDEKESYCSD FFKFEIPDLL DVNPFV

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRTPCCEKE GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKKLLRMG  120
IDPVTHNPRL DVLDLSSILG SSFYNNPNSQ INSFSRLIGI HNRLANSFMS FNNMSHFSMQ  180
NVENHEQSNM IISQSQLLPP QQPHYQIDQS PALPPLHEAS AGCSPSTTTS CGGEAYLFPS  240
SNFSDFYSQN CQQQTQELNG FDYSECALPS YDFYKQEQEQ EQVHQQVIEP SPETSTLNSS  300
PTPLNSNSTY FSTANGNGTD QDEKESYCSD FFKFEIPDLL DVNPFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-101	MYB family protein