PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544729.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 245aa MW: 27169.6 Da PI: 8.4935

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.3	3.9e-41	49	148	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lq+q++ l+ el+ XP_023544729.1 49 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISSLQHQIQALQIELN 143 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_023544729.1 144 AVRAE 148 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MSKERERFDE IAKKIKRETD VSSNIPPQQI MGRRHSLQAS PGILNTITPC AACKLLRRRC 60 AQECPFSPYF SPHEPHKFAS VHKVFGASNV SKMLMEVSEN QRADAANSLV YEANVRLRDP 120 VYGCMGAISS LQHQIQALQI ELNAVRAEIL RHKFREASNM IHSSPQPQQQ QHVSFLSSSA 180 EVVSVAVPPP PPSLPLPPPS HHDASSSSSP LYNRPTVATD YNTISSNENV TYFVSTTSTD 240 HQLNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	9e-83	LBD family protein