PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023544512.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 852aa    MW: 92652.1 Da    PI: 6.7812
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023544512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.34e-1294708292374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alpps  ++++s++ ++a+++f+ +sP++kfsh+
  XP_023544512.1 470 LTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLMPHTHSQKIASAFQVFNGISPFVKFSHF 564
                     579******************************************************************************************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s++ le+tg+rL++fAe+lg+pf+f + va+++ +l+l
  XP_023544512.1 565 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SQQVLEATGKRLTEFAEKLGLPFDFFP-VADKIGNLDL 654
                     *****************************************************....99*************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV+++   h+l++ ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl +++++eseer+ vE
  XP_023544512.1 655 ERLNVSKREAVAVHWMQ--HSLYEVTGSDSN----TLWLLQRLAPKVVTVVEQDLSH-TGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVE 742
                     ****************9..999988888888....**********************.889********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r+ + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaW+
  XP_023544512.1 743 QQLLSREIRNVLAVGGPSRTGEVK-FQNWREKLRQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDHGTLKLGWKDLCLLTASAWK 829
                     ******************988887.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    
MAAYALLGDS TGRVNGGFDD SPLTSASTNS NGSEERNHQQ TVQVQVIQSR KMVRKRIASE  60
MEIDGGGVTA SVHSRLSRRS LGSDRPFACG EIKGNVNYCS SSNPSHGGNH STVHNLTALT  120
SGVIEGTNLS NPPSASDATA SSTTSNNNNN NNATLLDSTL PVLRPQPHHH LQNPAVCGFS  180
GLPLFPPESN HHHKLNTRSN PFPLPNPSQI LLHNPPTTAT SSIIAAASSP MDDSSATAWI  240
DGIIKDLIHS STAISIPQLI QNVREIIYPC NPNLANLLEF RLRTLTEPSV PNFVAEDHRL  300
RKSTLPLPAP LAALGLQQRQ FNQEQHEQEH DCSGLKLNLD SSSLHNFPTF PSQPQFHEPY  360
LHWGATTPPV PTPSGEDALQ RLPGHHQLNL SSVTPSSLVS LNHVPSKPQS EQQNSCPVNV  420
KAAVAQPPTA AAAAAAPQPS NNPSATALLI REIKEEMRQQ KRDEEGLHLL TLLLQCAEAV  480
SADNLEEANK MLLEISELST PFGTSAQRVA AYFSEAMSAR LVSSCLGIYA ALPPSLMPHT  540
HSQKIASAFQ VFNGISPFVK FSHFTANQAI QEAFEREERV HIIDLDIMQG LQWPGLFHIL  600
ASRPGGPPYV RLTGLGTSQQ VLEATGKRLT EFAEKLGLPF DFFPVADKIG NLDLERLNVS  660
KREAVAVHWM QHSLYEVTGS DSNTLWLLQR LAPKVVTVVE QDLSHTGSFL GRFVEAIHYY  720
SALFDSLGVS YGEESEERHL VEQQLLSREI RNVLAVGGPS RTGEVKFQNW REKLRQSGFK  780
GISLAGNAAT QATLLLGMFP SDGYTLVEDH GTLKLGWKDL CLLTASAWKP PFHHHAAAAA  840
APATNNNHIP RY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein