PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544462.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 369aa MW: 41171.8 Da PI: 6.8558

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.8	2.3e-07	144	165	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_023544462.1 144 FCEICGKGFKRDANLRMHMRAH 165 6*******************99 PP
2	zf-C2H2	11.3	0.0011	263	278	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L H+ XP_023544462.1 263 CGTTFSRKDKLFGHMA 278 **************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MNHPTSSMEF SGDPLPMSMI GNGGPLVPLR NLSKIRSRMD AVQIFLSDNI DREVRISNQQ 60 MDAVSSEIVT AIQQIIVNGA ALLTCAREET PSTLDLTALT TLTHPNPVAE KSMAEMKVEG 120 DEFEPDREIV ELDAMELLAE HIHFCEICGK GFKRDANLRM HMRAHGNQFK TPEALAKPLD 180 IVGANRRAKQ SRFSCPYNGC PRNKMHKKFR SLKSLICVKN HFKRSHCPKM FSCNRCNKKS 240 FSVMADLKSH LKHCGESKWR CSCGTTFSRK DKLFGHMALF EGHMPAVADD DDGKGKTSVT 300 AATPETDEDG DSNRISKDVN FPNAWNGSDD GFFESFLDGF GSIENHCLQE VLGLPCNFDS 360 ESEWKICGF

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MNHPTSSMEF SGDPLPMSMI GNGGPLVPLR NLSKIRSRMD AVQIFLSDNI DREVRISNQQ  60
MDAVSSEIVT AIQQIIVNGA ALLTCAREET PSTLDLTALT TLTHPNPVAE KSMAEMKVEG  120
DEFEPDREIV ELDAMELLAE HIHFCEICGK GFKRDANLRM HMRAHGNQFK TPEALAKPLD  180
IVGANRRAKQ SRFSCPYNGC PRNKMHKKFR SLKSLICVKN HFKRSHCPKM FSCNRCNKKS  240
FSVMADLKSH LKHCGESKWR CSCGTTFSRK DKLFGHMALF EGHMPAVADD DDGKGKTSVT  300
AATPETDEDG DSNRISKDVN FPNAWNGSDD GFFESFLDGF GSIENHCLQE VLGLPCNFDS  360
ESEWKICGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	6e-78	C2H2 family protein