PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023544395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LSD | ||||||||
Protein Properties | Length: 171aa MW: 17793.6 Da PI: 8.4422 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36.3 | 9.1e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YP GA++V+CalC tV XP_023544395.1 7 CSGCRSILLYPGGATNVCCALCSTV 31 ***********************99 PP | |||||||
2 | zf-LSD1 | 47.1 | 3.9e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y rGA+sVRC++C+tV XP_023544395.1 46 CGGCRTLLMYARGATSVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 41.7 | 1.9e-13 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L +P+GApsV+Ca+C+ V XP_023544395.1 84 CGNCRTTLVFPYGAPSVKCAICHYV 108 **********************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MQSQLVCSGC RSILLYPGGA TNVCCALCST VTSVPPPGTD MAQLICGGCR TLLMYARGAT 60 SVRCSCCHTV NLAPATNQVA HVNCGNCRTT LVFPYGAPSV KCAICHYVTN VGMSNVRVPI 120 PVHRRNGTLG SGMPPSSSSQ SQTVVVENPM SVDESGKLVS NVVVGVTTDK R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 7e-72 | LSD family protein |