PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544280.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 613aa MW: 65886.8 Da PI: 6.7965

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.1e-30	346	404	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_023544280.1 346 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 404 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MDKGWGLTVR DSDHSIGFLS HNPSPLTLNS FHTMFRATDF PVKLSRTDDN DAPPPPPDDN 60 RFVVNEVDFF SDNKRVADNQ EDQDAKPSAN ILATVLVNKN DNVSTATGTA FVNTGLHLLT 120 ANTGSDQSST VDDGVSSDGD DKRAKNELAQ LQMELQRMKA ENHKLRDMLS HVSNNYSTLQ 180 MHFFTLLQQN QASQPGHEAE IGEKKSRELK QEVGRAVVPR QFMDLGPSGN TAEMDELSNS 240 SSDERTRSGS PLNNNNNNNS ESASKKSSAR DHLEIAAPSE QGNSNARDAK RSIPREESSE 300 SESHGWGPNK APRFNSSTKP LEQSTEATMR KARVSVRARS EAPMISDGCQ WRKYGQKMAK 360 GNPCPRAYYR CTMAVGCPVR KQVQRCAEDR TILITTYEGN HNHPLPPAAM AMASTTTAAA 420 TMLLSGSMSS ADHNLMNPNL LARAILPCSS SMATISASAP FPTITLDLTQ TPNPLQFQRP 480 AAAPFHLPFP GGQPPLPPAQ VLGQPLYNQS KFSGLQLSHE MGANSPHLGH PQIAQPAPTT 540 QSGGASFADT LSAATAAITA DPNFTAALAA AISSIIGGAH SNTNSTTTTN TTTNNNNNNN 600 GDNNSKISSF PGN

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MDKGWGLTVR DSDHSIGFLS HNPSPLTLNS FHTMFRATDF PVKLSRTDDN DAPPPPPDDN  60
RFVVNEVDFF SDNKRVADNQ EDQDAKPSAN ILATVLVNKN DNVSTATGTA FVNTGLHLLT  120
ANTGSDQSST VDDGVSSDGD DKRAKNELAQ LQMELQRMKA ENHKLRDMLS HVSNNYSTLQ  180
MHFFTLLQQN QASQPGHEAE IGEKKSRELK QEVGRAVVPR QFMDLGPSGN TAEMDELSNS  240
SSDERTRSGS PLNNNNNNNS ESASKKSSAR DHLEIAAPSE QGNSNARDAK RSIPREESSE  300
SESHGWGPNK APRFNSSTKP LEQSTEATMR KARVSVRARS EAPMISDGCQ WRKYGQKMAK  360
GNPCPRAYYR CTMAVGCPVR KQVQRCAEDR TILITTYEGN HNHPLPPAAM AMASTTTAAA  420
TMLLSGSMSS ADHNLMNPNL LARAILPCSS SMATISASAP FPTITLDLTQ TPNPLQFQRP  480
AAAPFHLPFP GGQPPLPPAQ VLGQPLYNQS KFSGLQLSHE MGANSPHLGH PQIAQPAPTT  540
QSGGASFADT LSAATAAITA DPNFTAALAA AISSIIGGAH SNTNSTTTTN TTTNNNNNNN  600
GDNNSKISSF PGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-109	WRKY family protein