PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544175.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-other

Protein Properties

Length: 1776aa MW: 201486 Da PI: 4.7251

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.4e-19	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgLt+rq ++WF+ rR k+kk XP_023544175.1 31 PKRQMKTPFQLETLEKAYALDTYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKK 86 69****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1776 aa Download sequence
MEAAASDGEN HNHNNDDINK ISNSREGLSK PKRQMKTPFQ LETLEKAYAL DTYPSESTRA 60 ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRKVMAPAL PDSPIDELRV VAEPGSDYAS 120 GSGSGSSPFG DVGLRNVVPR SVGDDMPMMR RYYEPSRSVM ELRAIACVES QLGEPLREDG 180 PILGIEFDSL PPDAFGAPIV AEQQKRSGHS YGEKYEQRDA KSNKVTARGF TEYPFMPDQS 240 NIRADAYGPV AQSHYPDSLV EVTAARTPYL LGHEQPNRSH NYHGQVSRVR LLSQQEKQAV 300 TIPSPAEDST CVPPRDSFAS IRMNSQFTEH PIVGQENYVL ADGHVFPEDV MIRMERKRKS 360 EEARLNKEAE AHEIKMRKEL EKQDILRKKS EERMRREMEK QDRERRREEE KLLREKQREE 420 ERLKREERRE HERKEKFLQR EYLRAEKRRQ KEALRKEKEA VRRQAAIEKA TARRIARESM 480 ELIEDEQLEL MELAAANKGF SSILSLDHDT LQNLESFQDY LGAFPPKSVQ LKKPFGIQPW 540 INSEENIGNL LMVWRFFITF SDVLELWPFT LDEFVQALHD YDSRLLGEIH ICLLSLIVKD 600 IEDVARTPSA GLGINQNGIA NSGGGHPQIV EGAYAWGFDI CNWQKHLNLL TWPEIFRQLA 660 LSAGFGPQLK KRGLAWSEMR SNDEAKCGED VVSTLRNGSA AENAFAIMQE KGLLAPRRSR 720 HRLTPGTVKF AAFHVLSLEG SEGLTVLELA EKIQRSGLRD LSTSKTPEAS ISVALTRDTK 780 LFERIAPSTY RVRAPYRKDP DDAEEILSVA RKKIQVFQNG FLVGEDADDV ERDEESECDD 840 VDEDPEVDDM ATTALVNENV SKGDANLGVD NENVCHDIAG NLQNAVAKDI PSFPLSGSKD 900 TKYLNIPTEQ YAAIDETNIS DLDQDNMEID ESKEGESWIQ GLTEGEYHDL SVEERLNALI 960 ALTSIANEGN SIRLVLEDRL EAANAVKKQM LAEAQIDKSR LKEEIITKSD FPIHIVSKVE 1020 TEHNGSTMEG GQSPFPVTEK KNDETTPSTV ENLGNVSNER ATLVPDLFPG SDNFLAQQCG 1080 HASKRSRSQL KSYIAHKAEE MYTYRSLPLG RDRRHNRYWQ FVASSSSNDP GSGRIFVEMY 1140 DGKWRLIDSE EDFDALSMAL DTRGVRESHL RIMLQMIETS FKENVRRSLQ CANVMVQSGI 1200 APKHENDELS SSPDCNTGFN SPGSTICGLN LDTVVTSSSF RIELGRNENE KNAAFRRYQD 1260 LQRWMLREFF STSTLCAMKF GEKRCISLLD ICDSCLCLFE SQHSHCPSCH QTFGTSENDI 1320 NFLEHKRHCE MERMSNPLDV HMLDASLPLK SRLLKALLAF IEVHVPSEAF QSFWTEHRKD 1380 WGVRMKLSPS IEELLQILTL FESAVKRDFL KSDFTTTDEH LGSCSVSGTV MHDPSDIGSV 1440 PTLPWIPRTS AAVALRLCEV DASIYYIGCE KPEPDQDKEV GEHINFSNRY VQVKNEERTK 1500 LNDLDYDDLM KNENSANPKG FRTSNKRSRG SRDYGRRKKW QRKVNGSRSG QVRQNVKSNE 1560 KMNQGQRELG QGTQVMGIRG RRTVRKRRAE KSIPDEGLLG LMPSSSTHNI DESPKDYLGE 1620 WEDEKMDRFM DMEDEEENVM EDKENVMEDE ENEENEENEE NEENEENVNN NVEAMESEED 1680 GQGVVGYEEG GWEFGFEGTS NSNRWNNGDL EMGSDEDADL SEDYNGTEEG GNDDIEEELD 1740 VDDTSEESDC SPNRRRIVGN NNGGAESAVS DDDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1776 aa Download sequence

MEAAASDGEN HNHNNDDINK ISNSREGLSK PKRQMKTPFQ LETLEKAYAL DTYPSESTRA  60
ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRKVMAPAL PDSPIDELRV VAEPGSDYAS  120
GSGSGSSPFG DVGLRNVVPR SVGDDMPMMR RYYEPSRSVM ELRAIACVES QLGEPLREDG  180
PILGIEFDSL PPDAFGAPIV AEQQKRSGHS YGEKYEQRDA KSNKVTARGF TEYPFMPDQS  240
NIRADAYGPV AQSHYPDSLV EVTAARTPYL LGHEQPNRSH NYHGQVSRVR LLSQQEKQAV  300
TIPSPAEDST CVPPRDSFAS IRMNSQFTEH PIVGQENYVL ADGHVFPEDV MIRMERKRKS  360
EEARLNKEAE AHEIKMRKEL EKQDILRKKS EERMRREMEK QDRERRREEE KLLREKQREE  420
ERLKREERRE HERKEKFLQR EYLRAEKRRQ KEALRKEKEA VRRQAAIEKA TARRIARESM  480
ELIEDEQLEL MELAAANKGF SSILSLDHDT LQNLESFQDY LGAFPPKSVQ LKKPFGIQPW  540
INSEENIGNL LMVWRFFITF SDVLELWPFT LDEFVQALHD YDSRLLGEIH ICLLSLIVKD  600
IEDVARTPSA GLGINQNGIA NSGGGHPQIV EGAYAWGFDI CNWQKHLNLL TWPEIFRQLA  660
LSAGFGPQLK KRGLAWSEMR SNDEAKCGED VVSTLRNGSA AENAFAIMQE KGLLAPRRSR  720
HRLTPGTVKF AAFHVLSLEG SEGLTVLELA EKIQRSGLRD LSTSKTPEAS ISVALTRDTK  780
LFERIAPSTY RVRAPYRKDP DDAEEILSVA RKKIQVFQNG FLVGEDADDV ERDEESECDD  840
VDEDPEVDDM ATTALVNENV SKGDANLGVD NENVCHDIAG NLQNAVAKDI PSFPLSGSKD  900
TKYLNIPTEQ YAAIDETNIS DLDQDNMEID ESKEGESWIQ GLTEGEYHDL SVEERLNALI  960
ALTSIANEGN SIRLVLEDRL EAANAVKKQM LAEAQIDKSR LKEEIITKSD FPIHIVSKVE  1020
TEHNGSTMEG GQSPFPVTEK KNDETTPSTV ENLGNVSNER ATLVPDLFPG SDNFLAQQCG  1080
HASKRSRSQL KSYIAHKAEE MYTYRSLPLG RDRRHNRYWQ FVASSSSNDP GSGRIFVEMY  1140
DGKWRLIDSE EDFDALSMAL DTRGVRESHL RIMLQMIETS FKENVRRSLQ CANVMVQSGI  1200
APKHENDELS SSPDCNTGFN SPGSTICGLN LDTVVTSSSF RIELGRNENE KNAAFRRYQD  1260
LQRWMLREFF STSTLCAMKF GEKRCISLLD ICDSCLCLFE SQHSHCPSCH QTFGTSENDI  1320
NFLEHKRHCE MERMSNPLDV HMLDASLPLK SRLLKALLAF IEVHVPSEAF QSFWTEHRKD  1380
WGVRMKLSPS IEELLQILTL FESAVKRDFL KSDFTTTDEH LGSCSVSGTV MHDPSDIGSV  1440
PTLPWIPRTS AAVALRLCEV DASIYYIGCE KPEPDQDKEV GEHINFSNRY VQVKNEERTK  1500
LNDLDYDDLM KNENSANPKG FRTSNKRSRG SRDYGRRKKW QRKVNGSRSG QVRQNVKSNE  1560
KMNQGQRELG QGTQVMGIRG RRTVRKRRAE KSIPDEGLLG LMPSSSTHNI DESPKDYLGE  1620
WEDEKMDRFM DMEDEEENVM EDKENVMEDE ENEENEENEE NEENEENVNN NVEAMESEED  1680
GQGVVGYEEG GWEFGFEGTS NSNRWNNGDL EMGSDEDADL SEDYNGTEEG GNDDIEEELD  1740
VDDTSEESDC SPNRRRIVGN NNGGAESAVS DDDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	87	RRLKDKKE
2	448	464	RRQKEALRKEKEAVRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	HB-other family protein