PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023544007.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C2H2
Protein Properties Length: 221aa    MW: 23827.1 Da    PI: 4.4572
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023544007.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011110131223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     kC  Cgk F ++     H+r+H
  XP_023544007.1 110 KCATCGKAFGSWKAVFGHLRSH 131
                     7*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MCRNEVIGDP LVANLMERDR SQSSPENSTS HDGGDTPPMT LIGTPDDVIV SSSFSMPPTM  60
TFDMAPSSSP ETYGRKRGRV EQHVGGSSSG SGHKGKKKGE LIDPPSTDPK CATCGKAFGS  120
WKAVFGHLRS HPERDYRGAF PPPKVWEEML QQEARQGSSG MTIGRSVGGE MGMSPPSGRG  180
IGIDLNDPDE QGARREGFPF DLNMPAPEDE EDEEDDDNNE S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.13e-14C2H2 family protein